Browse Element(s) Details


Os.6270.1.S1_at

Description gb:AK065374.1
DB_XREF= gi:32975392
TID=Os.6270.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6270 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013003B24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013003B24, full insert sequence.
FL= gb:AK065374.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3516010/11Protein kinase domain containing protein, expressed
LOC_Os08g194103/11NAF domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g35150Os.47463.1.S1_x_at5/116+20471293..20474639transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g35150Os.14491.2.S1_x_at4/116+20471293..20474639transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g35160Os.6270.1.S1_at10/116+20489321..20491274Protein kinase domain containing protein, expressed
LOC_Os06g35160OsAffx.23335.1.S1_x_at3/116+20489321..20491274Protein kinase domain containing protein, expressed
LOC_Os06g35160OsAffx.20160.1.S1_x_at1/116+20489321..20491274Protein kinase domain containing protein, expressed
LOC_Os06g35170OsAffx.27947.1.S1_at11/116+20500868..20504289hypothetical protein
LOC_Os06g35180NANA6+20510675..20514608retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35190Os.25754.2.S1_x_at2/116+20515662..20518719retrotransposon protein, putative, unclassified
LOC_Os06g35190OsAffx.31069.2.S1_x_at1/116+20515662..20518719retrotransposon protein, putative, unclassified
LOC_Os06g35190Os.53479.1.S1_x_at1/116+20515662..20518719retrotransposon protein, putative, unclassified
LOC_Os06g35190OsAffx.17106.1.S1_x_at1/116+20515662..20518719retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005829cellular_componentcytosol
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6270.1.S1_at--587--3792Chr08:11597128..11597152 (25 bp)
CTCGTCATGGTCCAGGTGTGCAAGA
LOC_Os08g19410
Os.6270.1.S1_at--797--5012Chr08:11597177..11597201 (25 bp)
GCAGGTTCTGCGACAACGAGCTCAA
LOC_Os08g19410
Os.6270.1.S1_at--390--711Chr06:20489628..20489652 (25 bp)
ATGATGGATCAGTTGGCTCGAAAGA
LOC_Os06g35160
Os.6270.1.S1_at--239--2911Chr06:20489589..20489613 (25 bp)
AAGGATTGATCCCAGTATCTTTAAT
LOC_Os06g35160
Os.6270.1.S1_at--1019--6892Chr08:11597261..11597285 (25 bp)
GTATCATGTGGCACTGTTGCTGTTT
LOC_Os08g19410
Os.6270.1.S1_at--656--152Chr03:7609087..7609107 (21 bp)
ATTAGGCTGCTAAATGCTGCTACTA
NONE
Os.6270.1.S1_at--34--3031Chr06:20489438..20489462 (25 bp)
AATGCTGCTACTAATACCCTGTTCT
LOC_Os06g35160
Os.6270.1.S1_at--627--6711Chr06:20489418..20489442 (25 bp)
GTTCTCGTAGTTGTGCTCATTAAAT
LOC_Os06g35160
Os.6270.1.S1_at--198--3611Chr06:20489378..20489402 (25 bp)
CATTGGCAAGCCTATGGAGCTGTTA
LOC_Os06g35160
Os.6270.1.S1_at--907--8051Chr06:20489363..20489387 (25 bp)
GGAGCTGTTAACTTTGGCGTTTTAT
LOC_Os06g35160
Os.6270.1.S1_at--1063--10211NONE
TATTGTATACCCATGTTCCTTGCCA
NONE
Target Sequence 
CTCGTCATGGTCCAGGTGTGCAAGAAGGCCGGCGACACCGCCGAGTACCGCAGGTTCTGCGACAACGAGCTCAAGGCCGG
CCTGCGCGGCNTCGTCGTCGACGCCCTGCCGCCTCCGGTGGAGGGCGGCGGCCATGGCGGCGCGGCTGCTGCGGCTGAAG
CCGAATGAATGATGGATCAGTTGGCTCGAAAGAATTGATCTTTCAACAAGGATTGATCCCAGTATCTTTAATTGTTTTTC
ATTTTATTACTCATCATTGATTAGTTTATTAGTCTAGTTTAGCATTTTTGACAGTGATTGTGTGGTGGATCCTGATGAAT
GTATCATGTGGCACTGTTGCTGTTTAATTAGGCTGCTAAATGCTGCTACTAATACCCTGTTCTCGTAGTTGTGCTCATTA
AATTTGGGAAAGATTGTTCATTGGCAAGCCTATGGAGCTGTTAACTTTGGCGTTTTATTGTATACCCATGTTCCTTGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6270.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis