Browse Element(s) Details


OsAffx.27947.1.S1_at

Description tigr:9634.m03325
TID=OsAffx.27947.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3517011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g35160Os.6270.1.S1_at10/116+20489321..20491274Protein kinase domain containing protein, expressed
LOC_Os06g35160OsAffx.23335.1.S1_x_at3/116+20489321..20491274Protein kinase domain containing protein, expressed
LOC_Os06g35160OsAffx.20160.1.S1_x_at1/116+20489321..20491274Protein kinase domain containing protein, expressed
LOC_Os06g35170OsAffx.27947.1.S1_at11/116+20500868..20504289hypothetical protein
LOC_Os06g35180NANA6+20510675..20514608retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35190Os.25754.2.S1_x_at2/116+20515662..20518719retrotransposon protein, putative, unclassified
LOC_Os06g35190OsAffx.31069.2.S1_x_at1/116+20515662..20518719retrotransposon protein, putative, unclassified
LOC_Os06g35190Os.53479.1.S1_x_at1/116+20515662..20518719retrotransposon protein, putative, unclassified
LOC_Os06g35190OsAffx.17106.1.S1_x_at1/116+20515662..20518719retrotransposon protein, putative, unclassified
LOC_Os06g35200Os.12656.1.S1_s_at11/116+20521189..20523963Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27947.1.S1_at--578--7971Chr06:20501420..20501444 (25 bp)
GGATCTGAGCTCGTTGTGTGTGACT
LOC_Os06g35170
OsAffx.27947.1.S1_at--413--9471Chr06:20501417..20501441 (25 bp)
TCTGAGCTCGTTGTGTGTGACTGGA
LOC_Os06g35170
OsAffx.27947.1.S1_at--799--8551Chr06:20501396..20501420 (25 bp)
TGGAGGCAAGCCAACGCATGTGGAT
LOC_Os06g35170
OsAffx.27947.1.S1_at--739--2651Chr06:20501389..20501413 (25 bp)
AAGCCAACGCATGTGGATGCAGGCG
LOC_Os06g35170
OsAffx.27947.1.S1_at--298--3491Chr06:20501370..20501394 (25 bp)
CAGGCGGCGACGACTTGGGCGCAGA
LOC_Os06g35170
OsAffx.27947.1.S1_at--577--1851Chr06:20501361..20501385 (25 bp)
ACGACTTGGGCGCAGAGGAGACAAA
LOC_Os06g35170
OsAffx.27947.1.S1_at--639--5531Chr06:20501336..20501360 (25 bp)
GAAACGGCGGTCGACGTACGTGGAT
LOC_Os06g35170
OsAffx.27947.1.S1_at--166--911Chr06:20501276..20501300 (25 bp)
AGGCGGCGACCAGCAACCTTGGAGC
LOC_Os06g35170
OsAffx.27947.1.S1_at--1066--10031Chr06:20501217..20501241 (25 bp)
TAGAGACCGGATCAGGCGCCCACCA
LOC_Os06g35170
OsAffx.27947.1.S1_at--84--5871Chr06:20500915..20500939 (25 bp)
GAGCCAGCGATGGAGGCCGCCTCTT
LOC_Os06g35170
OsAffx.27947.1.S1_at--723--7991Chr06:20500905..20500929 (25 bp)
TGGAGGCCGCCTCTTTAGGTCCCAA
LOC_Os06g35170
Target Sequence 
GGATCTGAGCTCGTTGTGTGTGACTGGAGGCAAGCCAACGCATGTGGATGCAGGCGGCGACGACTTGGGCGCAGAGGAGA
CAAAGAAACGGCGGTCGACGTACGTGGATGGAGGCGGTGGATCTGGCGTCAAGAAGGGTGAAGGAGGCGGCGACCAGCAA
CCTTGGAGCCCGGGGGTTCCAGATCCGGTGGTCCCCAACCACCTAGAGACCGGATCAGGCGCCCACCACCTCGAGGCGAT
CACCGGCGACCACCACCGATCCTCAGGGACGAAGAAGCGGTCGCCGGAGCTCAGGGACGAAGAAGATCCGTCGGAGATCT
CCCGCATCCAGCAGGGGTGGGAGGGGAGGTGCGGTTGCGCGGGGGCTGCCGACGGCGGGAGGGGAGGCGGCCGAGGCCCG
ACGACGGCAGCGGTCTCCACCGCCCGTGGGTCGGCCGCCATTGACACCTCCAGCCGCGCCTCCGCCTCCGCCCATGCAAG
CCGGCCGCCAGCGCCACCGACGATGGAGCCAGCGATGGAGGCCGCCTCTTTAGGTCCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27947.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis