Browse Element(s) Details


Os.12656.1.S1_s_at

Description gb:AU029810
DB_XREF= gi:3763058
DB_XREF=AU029810
CLONE=E40064_3Z
TID=Os.12656.1
CNT=8
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.12656 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_199392.1 (A.thaliana) receptor kinase-like protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3520011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g35170OsAffx.27947.1.S1_at11/116+20500868..20504289hypothetical protein
LOC_Os06g35180NANA6+20510675..20514608retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35190Os.25754.2.S1_x_at2/116+20515662..20518719retrotransposon protein, putative, unclassified
LOC_Os06g35190OsAffx.31069.2.S1_x_at1/116+20515662..20518719retrotransposon protein, putative, unclassified
LOC_Os06g35190Os.53479.1.S1_x_at1/116+20515662..20518719retrotransposon protein, putative, unclassified
LOC_Os06g35190OsAffx.17106.1.S1_x_at1/116+20515662..20518719retrotransposon protein, putative, unclassified
LOC_Os06g35200Os.12656.1.S1_s_at11/116+20521189..20523963Leucine Rich Repeat family protein, expressed
LOC_Os06g35210Os.9209.2.S1_at10/116+20533183..20540697retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35220NANA6+20545708..20551299retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12656.1.S1_s_at--682--7311Chr06:20523397..20523421 (25 bp)
GTGCTCGAGCTCATAACCGGCCAAG
LOC_Os06g35200
Os.12656.1.S1_s_at--782--7651Chr06:20523457..20523481 (25 bp)
GGGATCATCCGCGACCAGAAGGGTC
LOC_Os06g35200
Os.12656.1.S1_s_at--578--4831Chr06:20523636..20523660 (25 bp)
GCTCAAGGACATCCGGGTGGCACCT
LOC_Os06g35200
Os.12656.1.S1_s_at--14--1591Chr06:20523667..20523691 (25 bp)
AGCTCATCCACTTGACGGTGGTGGA
LOC_Os06g35200
Os.12656.1.S1_s_at--258--8551Chr06:20523688..20523712 (25 bp)
TGGAGCAGCGCCATCGTGTGTGTCC
LOC_Os06g35200
Os.12656.1.S1_s_at--54--9431Chr06:20523701..20523725 (25 bp)
TCGTGTGTGTCCGTCGCAATTGGGA
LOC_Os06g35200
Os.12656.1.S1_s_at--1070--8631Chr06:20523721..20523745 (25 bp)
TGGGACCCGCCGTCGCCTGAGAAGA
LOC_Os06g35200
Os.12656.1.S1_s_at--185--2211Chr06:20523780..20523804 (25 bp)
ACAAGCCTTGGTGGTCGGTAGTAGA
LOC_Os06g35200
Os.12656.1.S1_s_at--76--2411Chr06:20523841..20523865 (25 bp)
AAACAGTTGGTTTCAGAGCCCCTTG
LOC_Os06g35200
Os.12656.1.S1_s_at--1098--7151Chr06:20523865..20523889 (25 bp)
GTCTCTCTTGTTTTTACTTTGGTGG
LOC_Os06g35200
Os.12656.1.S1_s_at--222--3691Chr06:20523881..20523905 (25 bp)
CTTTGGTGGATTTATTGCGTTGGGC
LOC_Os06g35200
Target Sequence 
GTGCTCGAGCTCATAACCGGCCAAGCCGGNCTGGGNACGAAGCGTCAGTTAGCTGGGCGCGGGGGATCATCCGCGACCAG
AAGGGTCTANGACATCGTGGACCCGAGAGTGCGGGACGAGGCGGGCGGCGGGCCGGAGACGTCGACGGTGGAGCGGGAGA
TGGTGGAGTGCCTGCGGGTGGGGTACTCTGCACCGCGCAGTNCGCCGGAGAAGAGGCCGACGATGCAGCAGGTGGTGGGG
GTGCTCAAGGACATCCGGGTGGCACCTGCCAGCAGCTCATCCACTTGACGGTGGTGGAGCAGCGCCATCGTGTGTGTCCG
TCGCAATTGGGACCCGCCGTCGCCTGAGAAGAGATNCCAGTGTGGCAGCCTTTCNTGATCTGGTAGACAAGCCTTGGTGG
TCGGTAGTAGAAACACATGTGCATGTAACAATTTTTTCTCGCCGGTAAAACAGTTGGTTTCAGAGCCCCTTGTCTCTCTT
GTTTTTACTTTGGTGGATTTATTGCGTTGGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12656.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis