Browse Element(s) Details


Os.6313.1.S1_at

Description gb:AK105086.1
DB_XREF= gi:32990295
TID=Os.6313.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6313 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-046-H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-046-H10, full insert sequence.
FL= gb:AK100926.1 gb:AK064783.1 gb:AK105086.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5237011/11UDP-N-acetylglucosamine pyrophosphorylase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52320Os.47317.1.S1_at11/114+30870200..30873541expressed protein
LOC_Os04g52330Os.17679.1.S1_at11/114+30876737..30878634expressed protein
LOC_Os04g52340Os.31773.2.S1_x_at10/114+30879851..30883952Cell differentiation protein rcd1, putative, expressed
LOC_Os04g52340Os.31773.2.S1_at10/114+30879851..30883952Cell differentiation protein rcd1, putative, expressed
LOC_Os04g52354Os.12042.1.S1_at11/114+30884213..3088884240S ribosomal protein S11, putative, expressed
LOC_Os04g52370Os.6313.1.S1_at11/114+30889854..30894370UDP-N-acetylglucosamine pyrophosphorylase, putative, expressed
LOC_Os04g52380Os.5641.1.S1_a_at11/114+30900345..30905085Methyl-CpG binding domain containing protein, expressed
LOC_Os04g52390Os.53340.1.S1_at11/114+30909247..30914331Potassium transporter 11, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0016779molecular_functionnucleotidyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6313.1.S1_at--33--731Chr04:30890528..30890552 (25 bp)
ATGATACCCCTGATAGCGCAAAGCT
LOC_Os04g52370
Os.6313.1.S1_at--654--1651Chr04:30890514..30890538 (25 bp)
AGCGCAAAGCTGATGCTGCTTCGTC
LOC_Os04g52370
Os.6313.1.S1_at--588--8931Chr04:30890453..30890477 (25 bp)
TGACCCATTCTGTCCCATTGTACAT
LOC_Os04g52370
Os.6313.1.S1_at--562--2391Chr04:30890280..30890304 (25 bp)
AAACTTGGAAGCCATTTGCCGCGGA
LOC_Os04g52370
Os.6313.1.S1_at--110--611Chr04:30890245..30890269 (25 bp)
ATGCGCCGAGTGAGATTTCCTTCTA
LOC_Os04g52370
Os.6313.1.S1_at--1056--1251Chr04:30890233..30890257 (25 bp)
AGATTTCCTTCTAGGTGACCTGTGA
LOC_Os04g52370
Os.6313.1.S1_at--755--1051Chr04:30890117..30890141 (25 bp)
AGGGTTTCCATTTTCCCTATGTCAT
LOC_Os04g52370
Os.6313.1.S1_at--425--8911Chr04:30890065..30890089 (25 bp)
TGAGCTCCTCAGATATTGGCCGGGT
LOC_Os04g52370
Os.6313.1.S1_at--891--2951Chr04:30889989..30890013 (25 bp)
AAGGCCATCTTGATTTTCACACAAA
LOC_Os04g52370
Os.6313.1.S1_at--771--4431Chr04:30889947..30889971 (25 bp)
GCCATTTTGGTTTCTCCTGTAGTCC
LOC_Os04g52370
Os.6313.1.S1_at--1014--7411Chr04:30889921..30889945 (25 bp)
GTGTTGCTCCCATGTAATCTGTAGA
LOC_Os04g52370
Target Sequence 
ATGATACCCCTGATAGCGCAAAGCTGATGCTGCTTCGTCTCCATAGTAGATGGGTAGTTGCTGCTGGTGGCTTCTTGACC
CATTCTGTCCCATTGTACATGACAGGTGTGGAAGTTTCTCCACTTAGCTCCTATGCTGGAGAAAACTTGGAAGCCATTTG
CCGCGGACGGACATTCCATGCGCCGAGTGAGATTTCCTTCTAGGTGACCTGTGACACAAACAGCTCTGTAACTTCAAATT
TGTGGAACAGTGGCAGAGAAAGGATTGCAGGATTTCATCTCAAACAGAAAAAAAAAAAAANNGATCACAGGGTTTCCATT
TTCCCTATGTCATGGGATGAATGGATGCTGTACAGTTCAGTGAGCTCCTCAGATATTGGCCGGGTTGTTTTATGTTGTGT
CATCTGTGAGTATTGTAATGTAGCCCCCAAAATTCTAAGGCCATCTTGATTTTCACACAAAAACATTTGTGTGGCAGTGC
CATTTTGGTTTCTCCTGTAGTCCTGTGTTGCTCCCATGTAATCTGTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6313.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis