Browse Element(s) Details


Os.53340.1.S1_at

Description gb:AK072123.1
DB_XREF= gi:32982146
TID=Os.53340.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53340 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013122K08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013122K08, full insert sequence.
FL= gb:AK072123.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5239011/11Potassium transporter 11, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52354Os.12042.1.S1_at11/114+30884213..3088884240S ribosomal protein S11, putative, expressed
LOC_Os04g52370Os.6313.1.S1_at11/114+30889854..30894370UDP-N-acetylglucosamine pyrophosphorylase, putative, expressed
LOC_Os04g52380Os.5641.1.S1_a_at11/114+30900345..30905085Methyl-CpG binding domain containing protein, expressed
LOC_Os04g52390Os.53340.1.S1_at11/114+30909247..30914331Potassium transporter 11, putative, expressed
LOC_Os04g52400Os.4851.1.S1_at11/114+30920159..30922461oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g52410Os.57418.1.S1_at11/114+30924033..30925135MADS-box protein ZMM17, putative, expressed
LOC_Os04g52420OsAffx.4155.1.S1_at11/114+30927916..30935621hypothetical protein
LOC_Os04g52420OsAffx.28375.1.S1_s_at2/114+30927916..30935621hypothetical protein
LOC_Os04g52420OsAffx.20689.1.A1_x_at1/114+30927916..30935621hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0015079molecular_functionpotassium ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53340.1.S1_at--157--8031Chr04:30909816..30909840 (25 bp)
GGAGGGATCCATCAGCAATGCATTT
LOC_Os04g52390
Os.53340.1.S1_at--299--2131Chr04:30909732..30909756 (25 bp)
ACAGGACTCCATTGTGCCAGTGCAG
LOC_Os04g52390
Os.53340.1.S1_at--1095--7271Chr04:30909719..30909743 (25 bp)
GTGCCAGTGCAGTCACCTCTGAGGG
LOC_Os04g52390
Os.53340.1.S1_at--1001--7611Chr04:30909695..30909719 (25 bp)
GGGAACAGCCTACTGAGGTATTCAA
LOC_Os04g52390
Os.53340.1.S1_at--474--8871Chr04:30909682..30909706 (25 bp)
TGAGGTATTCAAGCCAGGCCAGCCA
LOC_Os04g52390
Os.53340.1.S1_at--196--891Chr04:30909667..30909691 (25 bp)
AGGCCAGCCACACTGTCAGTGATGA
LOC_Os04g52390
Os.53340.1.S1_at--209--1111Chr04:30909494..30909518 (25 bp)
AGTGTGATCTTCAATGTTCCCCATG
LOC_Os04g52390
Os.53340.1.S1_at--801--731Chr04:30909481..30909505 (25 bp)
ATGTTCCCCATGAGAGCTTGCTTAA
LOC_Os04g52390
Os.53340.1.S1_at--358--6011Chr04:30909470..30909494 (25 bp)
GAGAGCTTGCTTAATGTTGGCCAAA
LOC_Os04g52390
Os.53340.1.S1_at--675--5531Chr04:30909433..30909457 (25 bp)
GAAACGCATTTTCCGGCTTAATTTG
LOC_Os04g52390
Os.53340.1.S1_at--629--7651Chr04:30909379..30909403 (25 bp)
GGGAGGCAGCTGTACATGTTTTTTA
LOC_Os04g52390
Target Sequence 
GGAGGGATCCATCAGCAATGCATTTCTGGCTGAGAAAACCAACAACAACACAATGTGCTCCAATGGTGACCTGAGCTACT
CATCACAGGACTCCATTGTGCCAGTGCAGTCACCTCTGAGGGGGAACAGCCTACTGAGGTATTCAAGCCAGGCCAGCCAC
ACTGTCAGTGATGAACTGGAGTTCCTGAACCGGTGTAAGGATGCCGGTGTCGTCCACATCCTCGGGAACACCATCGTCCT
CGCGAGGAGGGATTCGGGGATCATCAAGAAGATCGCGGTAAATTACATGTATGCCTTCATGAGGAAGATCTGCAGGGAGA
ACAGTGTGATCTTCAATGTTCCCCATGAGAGCTTGCTTAATGTTGGCCAAATATATTATATATGAAACGCATTTTCCGGC
TTAATTTGTGTAGGAGTAGGGCTCCATGGAAGAGGGAGGGAGGCAGCTGTACATGTTTTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53340.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis