Browse Element(s) Details


Os.4851.1.S1_at

Description gb:AK073265.1
DB_XREF= gi:32983288
TID=Os.4851.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.4851 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033025B16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033025B16, full insert sequence.
FL= gb:AK073265.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5240011/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52380Os.5641.1.S1_a_at11/114+30900345..30905085Methyl-CpG binding domain containing protein, expressed
LOC_Os04g52390Os.53340.1.S1_at11/114+30909247..30914331Potassium transporter 11, putative, expressed
LOC_Os04g52400Os.4851.1.S1_at11/114+30920159..30922461oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g52410Os.57418.1.S1_at11/114+30924033..30925135MADS-box protein ZMM17, putative, expressed
LOC_Os04g52420OsAffx.4155.1.S1_at11/114+30927916..30935621hypothetical protein
LOC_Os04g52420OsAffx.28375.1.S1_s_at2/114+30927916..30935621hypothetical protein
LOC_Os04g52420OsAffx.20689.1.A1_x_at1/114+30927916..30935621hypothetical protein
LOC_Os04g52430OsAffx.26572.1.S1_at11/114+30941815..30944324expressed protein
LOC_Os04g52430OsAffx.25952.1.S1_s_at1/114+30941815..30944324expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4851.1.S1_at--871--7071Chr04:30921645..30921669 (25 bp)
GTCAATGGAATTGCACCAGGGCCAA
LOC_Os04g52400
Os.4851.1.S1_at--932--4371Chr04:30921665..30921689 (25 bp)
GCCAATTGAAGGCACTCCAGGAATG
LOC_Os04g52400
Os.4851.1.S1_at--826--7631Chr04:30921720..30921744 (25 bp)
GGGAGTCGGGAAATAATGCCTTTAT
LOC_Os04g52400
Os.4851.1.S1_at--1088--291Chr04:30921768..30921792 (25 bp)
ATAGCTATGGCTGCACTTTACCTTG
LOC_Os04g52400
Os.4851.1.S1_at--172--2051Chr04:30921782..30921805 (24 bp)
ACTTTACCTTGCTTCTGATGCAGGA
LOC_Os04g52400
Os.4851.1.S1_at--22--6231Chr04:30922101..30922125 (25 bp)
GATGGAGGTCTTTGGCTAAGTCGCC
LOC_Os04g52400
Os.4851.1.S1_at--128--7451Chr04:30922254..30922278 (25 bp)
GTGTACTGTAGAATCCTTTACCGAG
LOC_Os04g52400
Os.4851.1.S1_at--1063--3771Chr04:30922271..30922295 (25 bp)
TTACCGAGGAGTCCCGTAGAATACT
LOC_Os04g52400
Os.4851.1.S1_at--334--2551Chr04:30922345..30922369 (25 bp)
AACTCCTGTAACATGCTCAGCACAT
LOC_Os04g52400
Os.4851.1.S1_at--157--9671Chr04:30922370..30922394 (25 bp)
TCACCTTGTTCACGCTCGAGTTAAA
LOC_Os04g52400
Os.4851.1.S1_at--782--2871Chr04:30922404..30922428 (25 bp)
AAGTGGTTCTCATTCATATTGTATC
LOC_Os04g52400
Target Sequence 
GTCAATGGAATTGCACCAGGGCCAATTGAAGGCACTCCAGGAATGAGGAAGCTTGCACCTGAGGAAATGGCCAAGGGGAG
TCGGGAAATAATGCCTTTATTTAAGTTGGGTGAAAAATGGGACATAGCTATGGCTGCACTTTACCTTGCTTCTGATGCAG
GAAAATATGTAAATGGGACTACAGTGGTTGTTGATGGAGGTCTTTGGCTAAGTCGCCCTCGCCATATTCCGAAGGAGGAA
GTGAAGGAGCTCTCAAAGGTTGTCGAGAAGAAGGTTAGGGCCTCTGGTGTTGGTGTGCCATCAAGCAAATTGTGATGTCC
TCTATGGTTTATATCGCCCTCCTACGTGTACTGTAGAATCCTTTACCGAGGAGTCCCGTAGAATACTTGGATGTTGCTAT
CACTTGTCATCGAAGTTTTCTATGATTCTATCTATCAACTCCTGTAACATGCTCAGCACATTCACCTTGTTCACGCTCGA
GTTAAACATTTGCCAAAGTGGTTCTCATTCATATTGTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4851.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis