Browse Element(s) Details


Os.57418.1.S1_at

Description gb:AY177698.1
DB_XREF= gi:30313680
TID=Os.57418.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57418 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) transcription factor MADS31 mRNA, complete cds.
PROD=transcription factor MADS31
FL= gb:AY177698.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5241011/11MADS-box protein ZMM17, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52380Os.5641.1.S1_a_at11/114+30900345..30905085Methyl-CpG binding domain containing protein, expressed
LOC_Os04g52390Os.53340.1.S1_at11/114+30909247..30914331Potassium transporter 11, putative, expressed
LOC_Os04g52400Os.4851.1.S1_at11/114+30920159..30922461oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g52410Os.57418.1.S1_at11/114+30924033..30925135MADS-box protein ZMM17, putative, expressed
LOC_Os04g52420OsAffx.4155.1.S1_at11/114+30927916..30935621hypothetical protein
LOC_Os04g52420OsAffx.28375.1.S1_s_at2/114+30927916..30935621hypothetical protein
LOC_Os04g52420OsAffx.20689.1.A1_x_at1/114+30927916..30935621hypothetical protein
LOC_Os04g52430OsAffx.26572.1.S1_at11/114+30941815..30944324expressed protein
LOC_Os04g52430OsAffx.25952.1.S1_s_at1/114+30941815..30944324expressed protein
LOC_Os04g52440Os.53822.1.S1_x_at11/114+30949947..30955649aminotransferase, class III family protein, expressed
LOC_Os04g52440OsAffx.26573.1.S1_x_at1/114+30949947..30955649aminotransferase, class III family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0008360biological_processregulation of cell shape
GO:0009908biological_processflower development
GO:0009911biological_processpositive regulation of flower development
GO:0009933biological_processmeristem organization
GO:0010023biological_processproanthocyanidin biosynthesis
GO:0045941biological_processpositive regulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57418.1.S1_at--827--8951Chr04:30924065..30924089 (25 bp)
TGAAAATCCGACAAACCGCCAAGTT
LOC_Os04g52410
Os.57418.1.S1_at--547--1491Chr04:30924125..30924149 (25 bp)
AGCAAATGAGCTGGCCATTCTTTGT
LOC_Os04g52410
Os.57418.1.S1_at--240--6611Chr04:30924167..30924191 (25 bp)
GATTGTGTTCTCAGGCACTGGCAAG
LOC_Os04g52410
Os.57418.1.S1_at--996--4191Chr04:30924623..30924647 (25 bp)
CCCCAGCACCCGTTTTGAGGAGATG
LOC_Os04g52410
Os.57418.1.S1_at--289--5511Chr04:30924768..30924792 (25 bp)
GAACAACAGGCTTAGGATCATCATG
LOC_Os04g52410
Os.57418.1.S1_at--570--10871Chr04:30924814..30924838 (25 bp)
TTGGCTTCACTGACTCTGCAAGATG
LOC_Os04g52410
Os.57418.1.S1_at--667--1571Chr04:30924999..30925023 (25 bp)
AGCTACTTGATCAGCAGCTGCTTGA
LOC_Os04g52410
Os.57418.1.S1_at--459--3831Chr04:30925016..30925040 (25 bp)
CTGCTTGAGATGCACAGCCGGGTAT
LOC_Os04g52410
Os.57418.1.S1_at--142--231Chr04:30925052..30925076 (25 bp)
ATATACCGGTTCAGTATTCTTCCCT
LOC_Os04g52410
Os.57418.1.S1_at--20--10571Chr04:30925068..30925092 (25 bp)
TTCTTCCCTACCTTATACACTATAT
LOC_Os04g52410
Os.57418.1.S1_at--339--371Chr04:30925100..30925124 (25 bp)
ATCAAGTTTTGATTGCCCTCTTTCC
LOC_Os04g52410
Target Sequence 
TGAAAATCCGACAAACCGCCAAGTTACCTTCTCCAAGAGGAGGATGGGGCTGCTCAAGAAAGCAAATGAGCTGGCCATTC
TTTGTGATGCACAAATTGGGGTGATTGTGTTCTCAGGCACTGGCAAGATGTACGAGTACTCCAGCCCCCCTTGGAGGATT
GCAAATATCTTTGATAGATACCTGAAAGCCCCCAGCACCCGTTTTGAGGAGATGGATGTTCAGCAGAGAATCATCCAAGA
GATGACAAGAATGAAGGATGAGAACAACAGGCTTAGGATCATCATGAGGCAGTATATGGGTGATGACTTGGCTTCACTGA
CTCTGCAAGATGTGAGTAATCTTGAGCAGCAGATTGAGTTTTCTCTGTACAAAGTTCGTCTAAGGAAGCAACAGCTACTT
GATCAGCAGCTGCTTGAGATGCACAGCCGGGTATGTAACAAGAGGATATACCGGTTCAGTATTCTTCCCTACCTTATACA
CTATATTGAAATAATCAAGTTTTGATTGCCCTCTTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57418.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis