Browse Element(s) Details


Os.6405.1.S1_at

Description gb:AK105910.1
DB_XREF= gi:32991119
TID=Os.6405.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6405 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-204-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-204-G09, full insert sequence.
FL= gb:AK105910.1 gb:AK100032.1 gb:AK100548.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2121011/11beta-glucan binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g21170OsAffx.29957.2.S1_s_at11/119+12776390..12777060homologous to glucosyltransferases, putative
LOC_Os09g21170OsAffx.29957.1.S1_x_at1/119+12776390..12777060homologous to glucosyltransferases, putative
LOC_Os09g21180OsAffx.29958.1.S1_at11/119+12779660..12782079Homeobox domain containing protein, expressed
LOC_Os09g21180OsAffx.29958.1.S1_x_at11/119+12779660..12782079Homeobox domain containing protein, expressed
LOC_Os09g21189OsAffx.8939.1.S1_x_at5/119+12787909..12788698NA
LOC_Os09g21189OsAffx.8939.1.S1_at2/119+12787909..12788698NA
LOC_Os09g21200NANA9+12789271..12791761hypothetical protein
LOC_Os09g21210Os.6405.1.S1_at11/119+12801545..12804260beta-glucan binding protein, putative, expressed
LOC_Os09g21210Os.6405.1.S2_at11/119+12801545..12804260beta-glucan binding protein, putative, expressed
LOC_Os09g21220OsAffx.4929.1.S1_at1/119+12808266..12809010hypothetical protein
LOC_Os09g21230Os.52593.1.S1_s_at11/119+12816241..12820673acyl-activating enzyme 17, putative, expressed
LOC_Os09g21230Os.38408.1.S1_a_at11/119+12816241..12820673acyl-activating enzyme 17, putative, expressed
LOC_Os09g21240NANA9+12822760..12823020hypothetical protein
LOC_Os09g21250Os.50756.1.S1_at10/119+12824718..12827073expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016798molecular_functionhydrolase activity, acting on glycosyl bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6405.1.S1_at--685--9091Chr09:12803257..12803281 (25 bp)
TGCTCGACGATTTCAGGTACCGGAG
LOC_Os09g21210
Os.6405.1.S1_at--117--7851Chr09:12803242..12803266 (25 bp)
GGTACCGGAGTATCGACGGCGACAT
LOC_Os09g21210
Os.6405.1.S1_at--1031--6431Chr09:12803201..12803225 (25 bp)
GATTCTTGGGTTCTCCGGACCGATC
LOC_Os09g21210
Os.6405.1.S1_at--880--2911Chr09:12803102..12803126 (25 bp)
AAGGATGTGGATGCCCTTGCTTCCA
LOC_Os09g21210
Os.6405.1.S1_at--440--4071Chr09:12803023..12803047 (25 bp)
CGAGGTTCGCCGTAATCGCCGAGGA
LOC_Os09g21210
Os.6405.1.S1_at--769--9031Chr09:12802969..12802993 (25 bp)
TGCAGCGATTCTTGAAGGCCACCGT
LOC_Os09g21210
Os.6405.1.S1_at--561--7931Chr09:12802910..12802934 (25 bp)
GGATTCCTCTATGAACCCAAATGGG
LOC_Os09g21210
Os.6405.1.S1_at--499--7711Chr09:12802886..12802910 (25 bp)
GGTGGCCTTGTCACATTGCAGGGAT
LOC_Os09g21210
Os.6405.1.S1_at--937--4031Chr09:12802845..12802869 (25 bp)
CGATTTCGGCTTCGGCATTTACAAT
LOC_Os09g21210
Os.6405.1.S1_at--945--7011Chr09:12802800..12802824 (25 bp)
GTACTTCTTGTACGCCATTGCTGTG
LOC_Os09g21210
Os.6405.1.S1_at--466--891Chr09:12802732..12802756 (25 bp)
AGGCCTACTCCATGGTTGCAGATTT
LOC_Os09g21210
Target Sequence 
TGCTCGACGATTTCAGGTACCGGAGTATCGACGGCGACATGGTCGGCGTCGTCGGCGATTCTTGGGTTCTCCGGACCGAT
CCGGTGTCCCCCACATGGCACTCGATGCGGGGCATCAGCGACGACGGGGTGGGCGAGGTCGCCGCCGCGCTGCGCAAGGA
TGTGGATGCCCTTGCTTCCAGCTCCATCACGACCACCTCCTCCTACTTCTACGGCAAGGCGATCGCCAGGGCGGCGAGGT
TCGCCGTAATCGCCGAGGAGGTCGGCTGCCCTGACGTCATCCCGGCGGTGCAGCGATTCTTGAAGGCCACCGTCACGCCA
TGGCTGGATGGCAGCTTCCAGGGCAATGGATTCCTCTATGAACCCAAATGGGGTGGCCTTGTCACATTGCAGGGATCCAA
GGACACCGGCGCCGATTTCGGCTTCGGCATTTACAATGATCACCACTACCATTTGGGGTACTTCTTGTACGCCATTGCTG
TGCTTGCCAAGATTGATCCCTCCTGGGGGAGGAAGTACATGCCCCAGGCCTACTCCATGGTTGCAGATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6405.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis