Browse Element(s) Details


Os.6405.1.S2_at

Description gb:AK100032.1
DB_XREF= gi:32985241
TID=Os.6405.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6405 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-204-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013148H21, full insert sequence.
FL= gb:AK105910.1 gb:AK100032.1 gb:AK100548.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2121011/11beta-glucan binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g21170OsAffx.29957.2.S1_s_at11/119+12776390..12777060homologous to glucosyltransferases, putative
LOC_Os09g21170OsAffx.29957.1.S1_x_at1/119+12776390..12777060homologous to glucosyltransferases, putative
LOC_Os09g21180OsAffx.29958.1.S1_at11/119+12779660..12782079Homeobox domain containing protein, expressed
LOC_Os09g21180OsAffx.29958.1.S1_x_at11/119+12779660..12782079Homeobox domain containing protein, expressed
LOC_Os09g21189OsAffx.8939.1.S1_x_at5/119+12787909..12788698NA
LOC_Os09g21189OsAffx.8939.1.S1_at2/119+12787909..12788698NA
LOC_Os09g21200NANA9+12789271..12791761hypothetical protein
LOC_Os09g21210Os.6405.1.S1_at11/119+12801545..12804260beta-glucan binding protein, putative, expressed
LOC_Os09g21210Os.6405.1.S2_at11/119+12801545..12804260beta-glucan binding protein, putative, expressed
LOC_Os09g21220OsAffx.4929.1.S1_at1/119+12808266..12809010hypothetical protein
LOC_Os09g21230Os.52593.1.S1_s_at11/119+12816241..12820673acyl-activating enzyme 17, putative, expressed
LOC_Os09g21230Os.38408.1.S1_a_at11/119+12816241..12820673acyl-activating enzyme 17, putative, expressed
LOC_Os09g21240NANA9+12822760..12823020hypothetical protein
LOC_Os09g21250Os.50756.1.S1_at10/119+12824718..12827073expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016798molecular_functionhydrolase activity, acting on glycosyl bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6405.1.S2_at--732--8911Chr09:12802111..12802135 (25 bp)
TGACCAACCTTCTCTGGTGGCTGCA
LOC_Os09g21210
Os.6405.1.S2_at--394--7851Chr09:12802036..12802060 (25 bp)
GGTACCGCCAGTATTGCCATTGATG
LOC_Os09g21210
Os.6405.1.S2_at--679--8851Chr09:12802001..12802025 (25 bp)
TGATCGCAGCAGAGATTGCCCGAGA
LOC_Os09g21210
Os.6405.1.S2_at--65--10711Chr09:12801986..12802010 (25 bp)
TTGCCCGAGATGATGCGTTGTTGCT
LOC_Os09g21210
Os.6405.1.S2_at--819--1331Chr09:12801914..12801938 (25 bp)
AGAGTGGGCTGTTCAGTTTCAGAGT
LOC_Os09g21210
Os.6405.1.S2_at--744--6831Chr09:12801899..12801923 (25 bp)
GTTTCAGAGTTTCCGTGTGATTCAA
LOC_Os09g21210
Os.6405.1.S2_at--974--4831Chr09:12801864..12801888 (25 bp)
GCTACACACACATCTTTTACACTTT
LOC_Os09g21210
Os.6405.1.S2_at--419--7391Chr09:12801711..12801735 (25 bp)
GTGAGATTTCTCCTGCTGATAGCCT
LOC_Os09g21210
Os.6405.1.S2_at--1100--291Chr09:12801693..12801717 (25 bp)
ATAGCCTGCTAGCAGGTGTGGCCCA
LOC_Os09g21210
Os.6405.1.S2_at--1143--7471Chr09:12801678..12801702 (25 bp)
GTGTGGCCCATTCTCAATCTCAGGG
LOC_Os09g21210
Os.6405.1.S2_at--227--3051Chr09:12801663..12801687 (25 bp)
AATCTCAGGGCTCAGGCCAGTTTAT
LOC_Os09g21210
Target Sequence 
TGACCAACCTTCTCTGGTGGCTGCACAGCCGCGGCACCGCCGATGATGGCGTCGTCGGGTTCTCCAGGTGCTGCTGGTAC
CGCCAGTATTGCCATTGATGGGGGCTGAAATGATCGCAGCAGAGATTGCCCGAGATGATGCGTTGTTGCTGAAGATCAGG
TTGTGTGGGTGATATGCCGAAGGATACAGATTATTATAGAGTGGGCTGTTCAGTTTCAGAGTTTCCGTGTGATTCAAACA
TCAGGATGCTACACACACATCTTTTACACTTTGTTGTTTCAATAAAAAGTAGTCAAAAGTCATGGTATGTTGATATTTTA
CATGGAACGCAATTGGTTCAGAAGTTTTGAGTTGCCNATGTTTTCTTTTTTTTTTNCTCTCTCTTTGTCTCGGTTTTGAG
AGTGAGATTTCTCCTGCTGATAGCCTGCTAGCAGGTGTGGCCCATTCTCAATCTCAGGGCTCAGGCCAGTTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6405.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis