Browse Element(s) Details


Os.6425.1.S1_at

Description gb:AK071114.1
DB_XREF= gi:32981137
TID=Os.6425.1
CNT=50
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6425 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023078F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023078F10, full insert sequence.
FL= gb:AK071114.1 gb:AK062236.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3787011/11ATP-citrate synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37840Os.18879.1.S2_at11/1112+23215284..23219764Boron transporter 1, putative, expressed
LOC_Os12g37840Os.18879.1.S1_at11/1112+23215284..23219764Boron transporter 1, putative, expressed
LOC_Os12g37850OsAffx.32074.1.S1_at10/1112+23222638..23225082expressed protein
LOC_Os12g37860Os.15365.1.S1_at11/1112+23232491..23239375expressed protein
LOC_Os12g37870Os.6425.1.S1_at11/1112+23241560..23245604ATP-citrate synthase, putative, expressed
LOC_Os12g37880Os.18647.1.S1_at6/1112+23246399..23249085expressed protein
LOC_Os12g37890Os.16918.1.S1_at11/1112+23250365..23259137expressed protein
LOC_Os12g37900NANA12+23259935..23260482expressed protein
LOC_Os12g37910Os.14915.1.S1_a_at11/1112+23261363..23265644GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os12g37920OsAffx.32075.1.S1_at11/1112+23269146..23272653expressed protein
LOC_Os12g37920Os.56047.1.S1_at3/1112+23269146..23272653expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006085biological_processacetyl-CoA biosynthesis
GO:0006633biological_processfatty acid biosynthesis
GO:0007568biological_processaging
GO:0009911biological_processpositive regulation of flower development
GO:0010025biological_processwax biosynthesis
GO:0015995biological_processchlorophyll biosynthesis
GO:0016117biological_processcarotenoid biosynthesis
GO:0019252biological_processstarch biosynthesis
GO:0043481biological_processanthocyanin accumulation in tissues in response to UV light
GO:0045793biological_processpositive regulation of cell size
GO:0045995biological_processregulation of embryonic development
GO:0048366biological_processleaf development
GO:0005829cellular_componentcytosol
GO:0009346cellular_componentcitrate lyase complex
GO:0008815molecular_functioncitrate (pro-3S)-lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6425.1.S1_at--481--5291Chr12:23244876..23244900 (25 bp)
GAAGGCTGCACGGATGAACATTTAC
LOC_Os12g37870
Os.6425.1.S1_at--376--7771Chr12:23244913..23244937 (25 bp)
GGTCCAAACTACCAAACTGGCCTTG
LOC_Os12g37870
Os.6425.1.S1_at--278--8451Chr12:23244930..23244954 (25 bp)
TGGCCTTGCCAAAATGCGTACACTA
LOC_Os12g37870
Os.6425.1.S1_at--998--1411Chr12:23245221..23245245 (25 bp)
AGACAACTATTTGCGCTGTTCCCAG
LOC_Os12g37870
Os.6425.1.S1_at--828--6691Chr12:23245238..23245262 (25 bp)
GTTCCCAGCTTGAGTCCATTTTGTT
LOC_Os12g37870
Os.6425.1.S1_at--1091--7411Chr12:23245283..23245307 (25 bp)
GTGTTGCCTTTCTCTCTGAGGGAAT
LOC_Os12g37870
Os.6425.1.S1_at--392--1231Chr12:23245416..23245440 (25 bp)
AGTTCTGAATTCTCTGTGCCTTGGT
LOC_Os12g37870
Os.6425.1.S1_at--1020--7271Chr12:23245431..23245455 (25 bp)
GTGCCTTGGTTGGTGGCCTTATCCA
LOC_Os12g37870
Os.6425.1.S1_at--759--8431Chr12:23245445..23245469 (25 bp)
GGCCTTATCCACCAAACTCAAAGAG
LOC_Os12g37870
Os.6425.1.S1_at--1039--931Chr12:23245522..23245546 (25 bp)
AGGAACTGCGTTGTTGTGGCTTGAT
LOC_Os12g37870
Os.6425.1.S1_at--2--331Chr12:23245578..23245602 (25 bp)
ATACTTCATTCTTTTTGCCGGACTT
LOC_Os12g37870
Target Sequence 
GAAGGCTGCACGGATGAACATTTACGTTCGGAGAGGTGGTCCAAACTACCAAACTGGCCTTGCCAAAATGCGTACACTAG
GTGCAGAACTTGGTGTTCCAATTGAGGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGATTGC
ATCATGGCTGAAGCATAATTCAGACAACTATTTGCGCTGTTCCCAGCTTGAGTCCATTTTGTTTCAGAAATTGTCAGTGT
GAGGTGTTGCCTTTCTCTCTGAGGGAATGTGTGCTGTTGTTGGTGTAAAACAAAACAAAGAAAGATCGTATTGTTAGAAT
AAACTACATCTGTAAGTTTGTAACGTAATTACGCAATAATGTTAATGTTTGTTTCTAGTTCTGAATTCTCTGTGCCTTGG
TTGGTGGCCTTATCCACCAAACTCAAAGAGNGTTCTTGATTTTGTCATGTATGAGAGACAGTGAAATGGAGGGCTTAGTG
ACAGGAACTGCGTTGTTGTGGCTTGATTATTGATGTAGTCATATGGTCATATATTCATATACTTCATTCTTTTTGCCGGA
CTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6425.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis