Browse Element(s) Details


Os.6450.1.S1_at

Description gb:AK100909.1
DB_XREF= gi:32986118
TID=Os.6450.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6450 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023132G24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023132G24, full insert sequence.
FL= gb:AK100909.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0919011/111-deoxy-D-xylulose-5-phosphate synthase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09190Os.6450.1.S1_at11/117+4819507..48229651-deoxy-D-xylulose-5-phosphate synthase, chloroplast precursor, putative, expressed
LOC_Os07g09200OsAffx.28358.1.S1_at11/117+4827210..4827892hypothetical protein
LOC_Os07g09210OsAffx.16167.1.S1_at11/117+4828650..4829408hypothetical protein
LOC_Os07g09220OsAffx.16168.1.S1_at11/117+4832264..4832932adenylate isopentenyltransferase 8, putative
LOC_Os07g09230Os.28943.1.S1_x_at1/117+4834922..4838164retrotransposon protein, putative, unclassified
LOC_Os07g09240NANA7+4838549..4843930retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016114biological_processterpenoid biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0004739molecular_functionpyruvate dehydrogenase (acetyl-transferring) activity
GO:0008661molecular_function1-deoxy-D-xylulose-5-phosphate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6450.1.S1_at--167--4731Chr07:4822380..4822404 (25 bp)
GCTGTCCTTGCTTGGGAGGCCATTG
LOC_Os07g09190
Os.6450.1.S1_at--280--31Chr07:4822401..4822425 (25 bp)
ATTGGAGGCACTTCAGCTCAGCTGA
LOC_Os07g09190
Os.6450.1.S1_at--773--9051Chr07:4822445..4822469 (25 bp)
TGCATATACACATCAGCCGACAAAT
LOC_Os07g09190
Os.6450.1.S1_at--306--1351Chr07:4822500..4822524 (25 bp)
AGAGATATGGAGATCTTCTCCTTCT
LOC_Os07g09190
Os.6450.1.S1_at--1020--10551Chr07:4822521..4822545 (25 bp)
TTCTCCATTATCCTTGGCCTAATTA
LOC_Os07g09190
Os.6450.1.S1_at--84--2931Chr07:4822619..4822643 (25 bp)
AAGGCAACAAAAAGCCCATGTGTAT
LOC_Os07g09190
Os.6450.1.S1_at--292--3511Chr07:4822635..4822659 (25 bp)
CATGTGTATGTGTTTCTTGGCCTGT
LOC_Os07g09190
Os.6450.1.S1_at--420--5311Chr07:4822774..4822798 (25 bp)
GAAGGATATGCCTCTCATCTGGCAT
LOC_Os07g09190
Os.6450.1.S1_at--890--4291Chr07:4822784..4822808 (25 bp)
CCTCTCATCTGGCATTGTCAGGAGT
LOC_Os07g09190
Os.6450.1.S1_at--438--5271Chr07:4822818..4822842 (25 bp)
GAATGCATGGCTCCTTATGTTCTTT
LOC_Os07g09190
Os.6450.1.S1_at--767--2191Chr07:4822906..4822930 (25 bp)
ACAAACTCAGTTCCCTATGCAGAAG
LOC_Os07g09190
Target Sequence 
GCTGTCCTTGCTTGGGAGGCCATTGGAGGCACTTCAGCTCAGCTGAATAATTCAGCATGACTGTATGCATATACACATCA
GCCGACAAATAAACAGGAAACTGATGATAGCTAATTTATGAGAGATATGGAGATCTTCTCCTTCTCCATTATCCTTGGCC
TAATTAACCATGGCCACATGGATATGGAGGGGGGGAGGTTCCAGTAAGAAGTAGGGTTACTAGGAAGAAGATGAAGGAGA
AGGCAACAAAAAGCCCATGTGTATGTGTTTCTTGGCCTGTTGCAAAACATGCTTCCAAATGCAAAATGATAATGGAGGTG
TTTGTGTACAAGAGGATGGAGACATGAAGATGGGGCATGCATGTCCTTGCATGATAGTATTGACATGAGAAGGAGAAGGA
TATGCCTCTCATCTGGCATTGTCAGGAGTGACATATATGAATGCATGGCTCCTTATGTTCTTTTGTTACTTTGTATAGAT
AACAAGTATAAGAAAGAATCATGTATTCTAGTAGTACTACATACATACAAACTCAGTTCCCTATGCAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6450.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis