Browse Element(s) Details


Os.6544.1.S1_a_at

Description gb:AK072803.1
DB_XREF= gi:32982826
TID=Os.6544.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6544 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-125-A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023139J24, full insert sequence.
FL= gb:AK072803.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0169011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g01650NANA9+466011..472046peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os09g01660NANA9+473421..474010hypothetical protein
LOC_Os09g01670OsAffx.29670.1.S1_at10/119+475979..483575peptidyl-prolyl cis-trans isomerase, FKBP-type family protein
LOC_Os09g01670Os.50619.1.S1_at1/119+475979..483575peptidyl-prolyl cis-trans isomerase, FKBP-type family protein
LOC_Os09g01670Os.50619.1.S1_x_at1/119+475979..483575peptidyl-prolyl cis-trans isomerase, FKBP-type family protein
LOC_Os09g01680OsAffx.29672.1.S1_at10/119+484020..489807DNA repair protein RAD51 homolog 4, putative, expressed
LOC_Os09g01690Os.6544.1.S1_a_at11/119+489945..492982expressed protein
LOC_Os09g01700OsAffx.29673.1.S1_at11/119+493816..496572hypothetical protein
LOC_Os09g01720NANA9+505489..507451hypothetical protein
LOC_Os09g01730NANA9+513691..514140retrotransposon protein, putative, unclassified
LOC_Os09g01740NANA9+517170..517709retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6544.1.S1_a_at--800--5131Chr09:492496..492520 (25 bp)
GCAAAGAAGCGCCTGAAACGCCAAA
LOC_Os09g01690
Os.6544.1.S1_a_at--749--2871Chr09:492642..492666 (25 bp)
AAGTGGCACACATCAATCGGATTTG
LOC_Os09g01690
Os.6544.1.S1_a_at--124--1411Chr09:492678..492702 (25 bp)
AGACTACTGTTGAACCATTTCTTGG
LOC_Os09g01690
Os.6544.1.S1_a_at--425--1731Chr09:492691..492715 (25 bp)
ACCATTTCTTGGAGATTACTTCTGA
LOC_Os09g01690
Os.6544.1.S1_a_at--520--2051Chr09:492708..492732 (25 bp)
ACTTCTGAAGTAGAGCTTTGAGCAT
LOC_Os09g01690
Os.6544.1.S1_a_at--406--671Chr09:492731..492755 (25 bp)
ATGAACTAATATTGGCAGGCTGCAG
LOC_Os09g01690
Os.6544.1.S1_a_at--834--8891Chr09:492793..492817 (25 bp)
TGAGATGTGGCTTGTTTTCCTTGCT
LOC_Os09g01690
Os.6544.1.S1_a_at--245--6811Chr09:492806..492830 (25 bp)
GTTTTCCTTGCTCTGATAAAGTGAC
LOC_Os09g01690
Os.6544.1.S1_a_at--191--3891Chr09:492863..492887 (25 bp)
CTGGTTACCTTGTTTGTTTCTTCTG
LOC_Os09g01690
Os.6544.1.S1_a_at--891--6831Chr09:492878..492902 (25 bp)
GTTTCTTCTGAATTATCATGTCTGG
LOC_Os09g01690
Os.6544.1.S1_a_at--296--10011Chr09:492922..492946 (25 bp)
TAGCTTACTCGTGACATTTAAATGA
LOC_Os09g01690
Target Sequence 
GCAAAGAAGCGCCTGAAACGCCAAAAGAAGANGCAGCGGAAGAAAGAGAAGAAACGATCNNAAACTNATAATGGNGGCGA
GCAACCTAACGGAGGGGAGTCGTCTGGTGGTGANGAGGATNNANNNNANNNANNNAAGCCATAGGCAAGTGGCACACATC
AATCGGATTTGAAGTTGCTATTAGACTACTGTTGAACCATTTCTTGGAGATTACTTCTGAAGTAGAGCTTTGAGCATGAA
CTAATATTGGCAGGCTGCAGGCCCCCTTGTAGTTTTTTCTTGGAAACACTCTTAAGATGAGATGTGGCTTGTTTTCCTTG
CTCTGATAAAGTGACTATGGAGTATGGATGGATAGATGAATCATTTTCTGGTTACCTTGTTTGTTTCTTCTGAATTATCA
TGTCTGGGGCTCCCTGTCCCTTACAATAGCTTACTCGTGACATTTAAATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6544.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis