Browse Element(s) Details


OsAffx.29670.1.S1_at

Description tigr:9637.m00004
TID=OsAffx.29670.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=PROBABLE FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE (PPIASE)(IMMUNOPHILIN) PROTEIN
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0167010/11peptidyl-prolyl cis-trans isomerase, FKBP-type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g01640Os.6161.1.S1_at11/119+455264..456840Zinc knuckle family protein, expressed
LOC_Os09g01650NANA9+466011..472046peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os09g01660NANA9+473421..474010hypothetical protein
LOC_Os09g01670OsAffx.29670.1.S1_at10/119+475979..483575peptidyl-prolyl cis-trans isomerase, FKBP-type family protein
LOC_Os09g01670Os.50619.1.S1_at1/119+475979..483575peptidyl-prolyl cis-trans isomerase, FKBP-type family protein
LOC_Os09g01670Os.50619.1.S1_x_at1/119+475979..483575peptidyl-prolyl cis-trans isomerase, FKBP-type family protein
LOC_Os09g01680OsAffx.29672.1.S1_at10/119+484020..489807DNA repair protein RAD51 homolog 4, putative, expressed
LOC_Os09g01690Os.6544.1.S1_a_at11/119+489945..492982expressed protein
LOC_Os09g01700OsAffx.29673.1.S1_at11/119+493816..496572hypothetical protein
LOC_Os09g01720NANA9+505489..507451hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0005516molecular_functioncalmodulin binding
GO:0005528molecular_functionFK506 binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29670.1.S1_at--989--451Chr09:481208..481232 (25 bp)
ATCTCTTGGCCTAGAGCATACTCTG
LOC_Os09g01670
OsAffx.29670.1.S1_at--124--5192Chr09:481237..481261 (25 bp)
GCAATGTGGTTCAAGCTGCTAGTCA
LOC_Os09g01670
OsAffx.29670.1.S1_at--95--6311Chr09:481444..481468 (25 bp)
GATGATGGTACTGCCGAAGACAATG
LOC_Os09g01670
OsAffx.29670.1.S1_at--852--3791Chr09:481487..481511 (25 bp)
CTCGCATTCGTGTACTTGATAGTGG
LOC_Os09g01670
OsAffx.29670.1.S1_at--331--2971Chr09:481778..481802 (25 bp)
AATGGTGATACTGTTGATCCTACCG
LOC_Os09g01670
OsAffx.29670.1.S1_at--1154--5791Chr09:481793..481817 (25 bp)
GATCCTACCGGTGAAAGTTCCACTT
LOC_Os09g01670
OsAffx.29670.1.S1_at--332--6431Chr09:481943..482080 (25 bp)
GATCTTGGTATCGATGGCATGCGTG
LOC_Os09g01670
OsAffx.29670.1.S1_at--1110--351Chr09:482089..482113 (25 bp)
ATAAGGAGACTTGGCATTCCTCCCC
LOC_Os09g01670
OsAffx.29670.1.S1_at--414--10671NONE
TTCCTCCCCATCTAGGCTATGGTGA
NONE
OsAffx.29670.1.S1_at--1098--1311Chr09:482844..482868 (25 bp)
AGAGGAAACATACCACCAAACGCGT
LOC_Os09g01670
OsAffx.29670.1.S1_at--83--4151Chr09:482864..482888 (25 bp)
CGCGTGGCTCAACTTTGATATCGAA
LOC_Os09g01670
Target Sequence 
ATCTCTTGGCCTAGAGCATACTCTGGGAGGCAATGTGGTTCAAGCTGCTAGTCAGGAGGAAAATGCTTCACAAACTCATG
AGGATAATGATGCTGCAGATCATATTATCCAACAAACTGACCCTCCTATCCTGGTCTCAGAAGATGATGGTACTGCCGAA
GACAATGATGAGGCCGAACTGCAGCCTCGCATTCGTGTACTTGATAGTGGTATGACAATAGAAGATCTGGCCAAGGGAAA
TGTTGGTGCCAAAATTGCATCTTGTGGCAAAAAGGTTTATGTGAAGTATGTCTGTATGTTGAGCAATGGTGATACTGTTG
ATCCTACCGGTGAAAGTTCCACTTGCAAATTCAAACTTGGTGCTGGAGAAGTCATTAGTGGATGGGATCTTGGTATCGAT
GGCATGCGTGTAGGTGGAATAAGGAGACTTGGCATTCCTCCCCATCTAGGCTATGGTGATGTTGGAAGAGGAAACATACC
ACCAAACGCGTGGCTCAACTTTGATATCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29670.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis