Browse Element(s) Details


OsAffx.29673.1.S1_at

Description tigr:9637.m00008
TID=OsAffx.29673.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0170011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g01650NANA9+466011..472046peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os09g01660NANA9+473421..474010hypothetical protein
LOC_Os09g01670OsAffx.29670.1.S1_at10/119+475979..483575peptidyl-prolyl cis-trans isomerase, FKBP-type family protein
LOC_Os09g01670Os.50619.1.S1_at1/119+475979..483575peptidyl-prolyl cis-trans isomerase, FKBP-type family protein
LOC_Os09g01670Os.50619.1.S1_x_at1/119+475979..483575peptidyl-prolyl cis-trans isomerase, FKBP-type family protein
LOC_Os09g01680OsAffx.29672.1.S1_at10/119+484020..489807DNA repair protein RAD51 homolog 4, putative, expressed
LOC_Os09g01690Os.6544.1.S1_a_at11/119+489945..492982expressed protein
LOC_Os09g01700OsAffx.29673.1.S1_at11/119+493816..496572hypothetical protein
LOC_Os09g01720NANA9+505489..507451hypothetical protein
LOC_Os09g01730NANA9+513691..514140retrotransposon protein, putative, unclassified
LOC_Os09g01740NANA9+517170..517709retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g01750Os.52238.1.S1_at6/119+521523..524616transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g01750OsAffx.23366.2.S1_s_at1/119+521523..524616transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29673.1.S1_at--637--8231Chr09:494388..494412 (25 bp)
GGCACAGGTAACAAGCTCACCAGCG
LOC_Os09g01700
OsAffx.29673.1.S1_at--527--6011Chr09:494277..494301 (25 bp)
GAGAGCAGCACTTGTCAGGGAGAAA
LOC_Os09g01700
OsAffx.29673.1.S1_at--143--8071Chr09:494259..494283 (25 bp)
GGAGAAACCAGCTCGGTAAGCCGTC
LOC_Os09g01700
OsAffx.29673.1.S1_at--836--2651Chr09:494242..494266 (25 bp)
AAGCCGTCGCTGTAGGGAAGCTCTT
LOC_Os09g01700
OsAffx.29673.1.S1_at--53--1591Chr09:494224..494248 (25 bp)
AGCTCTTGAAGCCTGTGTTCCTAAA
LOC_Os09g01700
OsAffx.29673.1.S1_at--46--10451Chr09:494174..494198 (25 bp)
TTAGTGGATGGTATGCTTCGCGAGA
LOC_Os09g01700
OsAffx.29673.1.S1_at--438--5711Chr09:494102..494126 (25 bp)
GACTCACTCTTGATGAGACTGCTAG
LOC_Os09g01700
OsAffx.29673.1.S1_at--265--2351Chr09:493996..494020 (25 bp)
AAAGCAAGCCGCATCCAATTTGTTT
LOC_Os09g01700
OsAffx.29673.1.S1_at--326--291Chr09:493970..493994 (25 bp)
ATAGCAATTGCAGCCCAGTGAGGAT
LOC_Os09g01700
OsAffx.29673.1.S1_at--185--10771Chr09:493940..493964 (25 bp)
TTGAGCTTCCATTTGTAGACGTACA
LOC_Os09g01700
OsAffx.29673.1.S1_at--370--10251Chr09:493929..493953 (25 bp)
TTTGTAGACGTACAGCCTGCTGAGC
LOC_Os09g01700
Target Sequence 
GGCACAGGTAACAAGCTCACCAGCGAAGCAATATCTGGAGATGCTCTTGTTGGTCCACTACTCCCAATCCCTCTTCTGCT
TGCAATTGAAGATAGAAACAAGGGTACTATAGAGAGCAGCACTTGTCAGGGAGAAACCAGCTCGGTAAGCCGTCGCTGTA
GGGAAGCTCTTGAAGCCTGTGTTCCTAAAACATCAAATGCCAATGCAACCAGGTTTAGTGGATGGTATGCTTCGCGAGAG
TTGAGAAAGAAGCCATATTTTGTTTATGAGCCTCAGATTGATGATAGACTCACTCTTGATGAGACTGCTAGAAAGGAGGG
TAAAAAGGCGCATATGGATGAAAACTTGACAACATTTGTTTGTGGAAAAGCTGGAGTTCCTCATTCTGGACCAAAGCAAG
CCGCATCCAATTTGTTTGATAGCAATTGCAGCCCAGTGAGGATGGATTTTGAGCTTCCATTTGTAGACGTACAGCCTGCT
GAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29673.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis