Browse Element(s) Details


Os.6557.1.S1_s_at

Description gb:AU165184
DB_XREF= gi:11414391
DB_XREF=AU165184
CLONE=Osjc33
TID=Os.6557.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.6557 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_181658.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0730011/11haloacid dehalogenase-like hydrolase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07260OsAffx.5734.1.S1_at11/118+4046809..4048291O-methyltransferase family protein
LOC_Os08g07270OsAffx.16872.1.S1_at11/118+4051250..4052767Cytokinin-O-glucosyltransferase 2, putative
LOC_Os08g07270OsAffx.16870.1.S1_x_at1/118+4051250..4052767Cytokinin-O-glucosyltransferase 2, putative
LOC_Os08g07280Os.52466.1.S1_at11/118+4059640..4062930expressed protein
LOC_Os08g07290Os.57432.1.S1_a_at11/118+4063464..4071319HEAT repeat family protein, expressed
LOC_Os08g07300Os.6557.1.S1_s_at11/118+4072322..4082539haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os08g07300OsAffx.29076.1.S1_s_at11/118+4072322..4082539haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os08g07300Os.53790.1.S1_at10/118+4072322..4082539haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os08g07320OsAffx.29078.1.S1_at11/118+4092169..4095042expressed protein
LOC_Os08g07330OsAffx.5737.1.S1_x_at11/118+4099054..4103614NB-ARC domain containing protein, expressed
LOC_Os08g07340OsAffx.5737.3.S1_at11/118+4105524..4109073NB-ARC domain containing protein
LOC_Os08g07340OsAffx.5737.1.S1_x_at1/118+4105524..4109073NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6557.1.S1_s_at--22--9691Chr08:4074457..4074481 (25 bp)
TCACCGCAGGTGATCTTCACAGGCT
LOC_Os08g07300
Os.6557.1.S1_s_at--928--1791Chr08:4074459..4074483 (25 bp)
ACCGCAGGTGATCTTCACAGGCTTT
LOC_Os08g07300
Os.6557.1.S1_s_at--791--5011Chr08:4074462..4074486 (25 bp)
GCAGGTGATCTTCACAGGCTTTCTT
LOC_Os08g07300
Os.6557.1.S1_s_at--297--1051Chr08:4074464..4074488 (25 bp)
AGGTGATCTTCACAGGCTTTCTTTT
LOC_Os08g07300
Os.6557.1.S1_s_at--271--7411Chr08:4074466..4074490 (25 bp)
GTGATCTTCACAGGCTTTCTTTTTT
LOC_Os08g07300
Os.6557.1.S1_s_at--463--10371Chr08:4074488..4074512 (25 bp)
TTTTTTCTCTCCAAAGCTTCGTTGT
LOC_Os08g07300
Os.6557.1.S1_s_at--703--10371Chr08:4074490..4074514 (25 bp)
TTTTCTCTCCAAAGCTTCGTTGTCA
LOC_Os08g07300
Os.6557.1.S1_s_at--982--10311Chr08:4074491..4074515 (25 bp)
TTTCTCTCCAAAGCTTCGTTGTCAT
LOC_Os08g07300
Os.6557.1.S1_s_at--856--9491Chr08:4074493..4074517 (25 bp)
TCTCTCCAAAGCTTCGTTGTCATGA
LOC_Os08g07300
Os.6557.1.S1_s_at--860--9491Chr08:4074495..4074519 (25 bp)
TCTCCAAAGCTTCGTTGTCATGACC
LOC_Os08g07300
Os.6557.1.S1_s_at--461--9211Chr08:4074497..4074521 (25 bp)
TCCAAAGCTTCGTTGTCATGACCAA
LOC_Os08g07300
Target Sequence 
TCACCGCAGGTGATCTTCACAGGCTTTCTTTTTTTTTCTCTCCAAAGCTTCGTTGTCATGACCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6557.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis