Browse Element(s) Details


Os.6867.1.S1_x_at

Description gb:AT003452
DB_XREF= gi:11025070
DB_XREF=AT003452
CLONE=mgir3H04
TID=Os.6867.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.6867 (NCBI UniGene Cluster)
UG_TITLE=O.sativa mRNA for thaumatin-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4338011/11Thaumatin-like protein precursor, putative, expressed
LOC_Os12g434103/11Thaumatin-like protein precursor, putative
LOC_Os03g460701/11P21 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43340Os.39257.1.S1_at11/1112+26855164..26856653Actin-depolymerizing factor, putative, expressed
LOC_Os12g43350Os.54199.1.S1_at11/1112+26861456..26862809expressed protein
LOC_Os12g43359NANA12+26868077..26868689NA
LOC_Os12g43370Os.12322.1.S1_at11/1112+26872692..26876424Methionine aminopeptidase 2, putative, expressed
LOC_Os12g43380Os.6867.1.S1_x_at11/1112+26879510..26880232Thaumatin-like protein precursor, putative, expressed
LOC_Os12g43390NANA12+26888574..26889098Thaumatin-like protein precursor, putative
LOC_Os12g43400OsAffx.20103.1.S1_at10/1112+26890545..26891096hypothetical protein
LOC_Os12g43410Os.6867.1.S1_x_at3/1112+26898672..26899691Thaumatin-like protein precursor, putative

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Gene Ontology Classification
GO idTypeName
GO:0009627biological_processsystemic acquired resistance
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0042828biological_processresponse to pathogen
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6867.1.S1_x_at--1003--4113Chr12:26899448..26899472 (25 bp)
CGCACGGGCTGCAGCTTCGACGGCT
LOC_Os12g43410
Os.6867.1.S1_x_at--1049--9491Chr12:26879871..26879895 (25 bp)
TCTCCGGCCAGAAGCCGCTGACGCT
LOC_Os12g43380
Os.6867.1.S1_x_at--688--7192Chr12:26879804..26879828 (25 bp)
GTCGGTGATCGACGGCTACAACGTC
LOC_Os12g43380
Os.6867.1.S1_x_at--558--6391Chr12:26879798..26879822 (25 bp)
GATCGACGGCTACAACGTCGCCATG
LOC_Os12g43380
Os.6867.1.S1_x_at--560--5372Chr12:26898713..26898737 (25 bp)
GAAGACAACACCAAGACACACGCCT
LOC_Os12g43410
Os.6867.1.S1_x_at--199--2171Chr12:26879694..26879718 (25 bp)
ACACCAAGACACACGCCTGCAGCGG
LOC_Os12g43380
Os.6867.1.S1_x_at--184--7151Chr12:26879650..26879674 (25 bp)
GTCTTCTGCCCATAATGCATCATCT
LOC_Os12g43380
Os.6867.1.S1_x_at--313--9491Chr12:26879646..26879670 (25 bp)
TCTGCCCATAATGCATCATCTCATG
LOC_Os12g43380
Os.6867.1.S1_x_at--69--4971Chr12:26879634..26879658 (25 bp)
GCATCATCTCATGCATGTAACTAAT
LOC_Os12g43380
Os.6867.1.S1_x_at--758--451Chr12:26879629..26879653 (25 bp)
ATCTCATGCATGTAACTAATGTAGT
LOC_Os12g43380
Os.6867.1.S1_x_at--467--2971Chr12:26879612..26879636 (25 bp)
AATGTAGTAGTATATGTATCATGGG
LOC_Os12g43380
Target Sequence 
CGCACGGGCTGCAGCTTCGACGGCTCCGGCCGCGGCAGCTGCGCCACCGGCGACTGCGCCGGCGCNCTGTCGTGCACCCT
CTCCGGCCAGAAGCCGCTGACGCTGGCGGAGTTCACCATCGGCGGCAGCCAGGACTTCTACGACCTGTCGGTGATCGACG
GCTACAACGTCGCCATGNGCTTNTCCTGCAGCTCCGGCGTGACGGTCNCCTGCAGGGACAGCCGCTGCCCCGACGCTTAC
CTNTTCCCCGAAGACAACACCAAGACACACGCCTGCAGCGGCAACAGCAACTACCAAGTCGTCTTCTGCCCATAATGCAT
CATCTCATGCATGTAACTAATGTAGTAGTATATGTATCATGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6867.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis