Browse Element(s) Details


Os.6873.1.S1_at

Description gb:CB682032
DB_XREF= gi:29685757
DB_XREF=OSJNEf08O02.r
CLONE=OSJNEf08O02
TID=Os.6873.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.6873 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3401010/11ZF-HD protein dimerisation region containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34000NANA8+21168747..21169358glycosyl transferase family 1 protein, putative
LOC_Os08g34010OsAffx.29500.1.S1_at10/118+21174650..21176207ZF-HD protein dimerisation region containing protein, expressed
LOC_Os08g34010Os.6873.1.S1_at10/118+21174650..21176207ZF-HD protein dimerisation region containing protein, expressed
LOC_Os08g34010OsAffx.29500.1.S1_x_at10/118+21174650..21176207ZF-HD protein dimerisation region containing protein, expressed
LOC_Os08g34020Os.15004.1.S1_at11/118+21181776..21184818exostosin family protein, putative, expressed
LOC_Os08g34030OsAffx.17322.1.S1_at11/118+21184788..21185574hypothetical protein
LOC_Os08g34040OsAffx.17323.1.S1_at10/118+21189225..21190083expressed protein
LOC_Os08g34050OsAffx.29501.1.S1_at11/118+21192127..21196463phosphofructokinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6873.1.S1_at--790--5651Chr08:21175023..21175047 (25 bp)
GACTTAATCAAGACTAGTAGCACAG
LOC_Os08g34010
Os.6873.1.S1_at--932--5691Chr08:21175012..21175036 (25 bp)
GACTAGTAGCACAGTCGAATCAAGG
LOC_Os08g34010
Os.6873.1.S1_at--325--7131Chr08:21174931..21174955 (25 bp)
GTCTAATTAACCAACCCTAATGGCT
LOC_Os08g34010
Os.6873.1.S1_at--539--2611Chr08:21174919..21174943 (25 bp)
AACCCTAATGGCTAATGAAATGACT
LOC_Os08g34010
Os.6873.1.S1_at--395--5711Chr08:21174898..21174922 (25 bp)
GACTCATCAGTCAACCTAGCAAGTA
LOC_Os08g34010
Os.6873.1.S1_at--167--9611Chr08:21174892..21174916 (25 bp)
TCAGTCAACCTAGCAAGTAGTAGTA
LOC_Os08g34010
Os.6873.1.S1_at--333--5131Chr08:21174858..21174882 (25 bp)
GCAAATTAGCTTTTGCTCTAATGGT
LOC_Os08g34010
Os.6873.1.S1_at--544--10271Chr08:21174847..21174871 (25 bp)
TTTGCTCTAATGGTGAGGCCCAAGC
LOC_Os08g34010
Os.6873.1.S1_at--937--6211Chr08:21174833..21174857 (25 bp)
GAGGCCCAAGCAAAGATTAGATTCA
LOC_Os08g34010
Os.6873.1.S1_at--80--7091Chr08:21174765..21174789 (25 bp)
GTCAATGGATGATGCAGGGACAATT
LOC_Os08g34010
Os.6873.1.S1_at--1051--8791Chr08:21174633..21174657 (25 bp)
TGTTCTAGTAGGATCTTATGCTGTC
NONE
Target Sequence 
GACTTAATCAAGACTAGTAGCACAGTCGAATCAAGGNTGTCTCTTTCTTTTCTTTTCTTTTTTTTTTCCTCTTTTTTTGT
AGCCTTTTTCCTGTCTAATTAACCAACCCTAATGGCTAATGAAATGACTCATCAGTCAACCTAGCAAGTAGTAGTAGTAG
CAGCAGCAAATTAGCTTTTGCTCTAATGGTGAGGCCCAAGCAAAGATTAGATTCATAAACAAAAATGTGGCCTTTTTTTT
TGGATCTGATGAAGAGATGTCAATGGATGATGCAGGGACAATTAGTACTACCACTAAGTACAGTGATTACTAGCTTTGTT
CTTGAGCTAATCTGGGTGTGCATGGATAATGATGATGATGATGTGCTAATCGGAGTCCTAGGTGGGGTAGTGTTCTAGTA
GGATCTTATGCTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6873.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis