Browse Element(s) Details


OsAffx.29500.1.S1_x_at

Description tigr:9636.m03411
TID=OsAffx.29500.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3401010/11ZF-HD protein dimerisation region containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34000NANA8+21168747..21169358glycosyl transferase family 1 protein, putative
LOC_Os08g34010OsAffx.29500.1.S1_at10/118+21174650..21176207ZF-HD protein dimerisation region containing protein, expressed
LOC_Os08g34010Os.6873.1.S1_at10/118+21174650..21176207ZF-HD protein dimerisation region containing protein, expressed
LOC_Os08g34010OsAffx.29500.1.S1_x_at10/118+21174650..21176207ZF-HD protein dimerisation region containing protein, expressed
LOC_Os08g34020Os.15004.1.S1_at11/118+21181776..21184818exostosin family protein, putative, expressed
LOC_Os08g34030OsAffx.17322.1.S1_at11/118+21184788..21185574hypothetical protein
LOC_Os08g34040OsAffx.17323.1.S1_at10/118+21189225..21190083expressed protein
LOC_Os08g34050OsAffx.29501.1.S1_at11/118+21192127..21196463phosphofructokinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29500.1.S1_x_at--1128--5851Chr08:21175683..21175707 (25 bp)
GAGCCACCAGCGTCGCGAGCAGTCG
LOC_Os08g34010
OsAffx.29500.1.S1_x_at--693--1711Chr08:21175678..21175702 (25 bp)
ACCAGCGTCGCGAGCAGTCGCCGGA
LOC_Os08g34010
OsAffx.29500.1.S1_x_at--336--1531Chr08:21175666..21175690 (25 bp)
AGCAGTCGCCGGAGACCGACCGCGT
LOC_Os08g34010
OsAffx.29500.1.S1_x_at--45--8831Chr08:21175593..21175617 (25 bp)
TGATTCCGAGGACTCCGAGATGTCC
LOC_Os08g34010
OsAffx.29500.1.S1_x_at--812--71Chr08:21175591..21175615 (25 bp)
ATTCCGAGGACTCCGAGATGTCCGA
LOC_Os08g34010
OsAffx.29500.1.S1_x_at--23--4171Chr08:21175588..21175612 (25 bp)
CCGAGGACTCCGAGATGTCCGACTA
LOC_Os08g34010
OsAffx.29500.1.S1_x_at--944--1991Chr08:21175582..21175606 (25 bp)
ACTCCGAGATGTCCGACTACGACGA
LOC_Os08g34010
OsAffx.29500.1.S1_x_at--271--631Chr08:21175484..21175508 (25 bp)
ATGCTGCTGTCGCTTGGCTCCGCGT
LOC_Os08g34010
OsAffx.29500.1.S1_x_at--393--2831Chr08:21175352..21175376 (25 bp)
AAGTTCAGCCCGGAGCAGAAGCAGC
LOC_Os08g34010
OsAffx.29500.1.S1_x_at--828--1071Chr08:21174762..21175258 (25 bp)
AGGGCGTCTTCAAGGGACAATTAGT
LOC_Os08g34010
OsAffx.29500.1.S1_x_at--1150--7551NONE
GGGCGTCTTCAAGGGACAATTAGTA
NONE
Target Sequence 
GAGCCACCAGCGTCGCGAGCAGTCGCCGGAGACCGACCGCGTGCGCGGGCCCGGGCACCACCACGACGACGACGCCGCCG
CCGACGATGATGATTCCGAGGACTCCGAGATGTCCGACTACGACGACGACCGCTCCGCCTCGCCGCTGCAGGCGCCGCCA
CCGGTGCTCTCTCCGGGGTACCTCCCCTCCGCGACGCACATGCTGCTGTCGCTTGGCTCCGCGTCCGCCCCGGCCGTGGC
GGCGTCGAGGCCCCACGCCGCCGCCGCCGCCATGGGGCCCCCGCCTCCGCCGGGCGCCGCGACGTCGGCGTCGAGGAAGC
GGTTCCGGACCAAGTTCAGCCCGGAGCAGAAGCAGCGGATGCAGGCGCTGTCGGAGCGGCTCGGGTGGCGCCTCCAGAAG
CGCGACGAGGCCGTCGTCGACGAGTGCTGCCGCGAGATCGGCGTCGGCAAGGGCGTCTTCAAGGGACAATTAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29500.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis