Browse Element(s) Details


Os.6976.1.S1_s_at

Description gb:CF297681
DB_XREF= gi:33666714
DB_XREF=30DGS--08-L05.g1
CLONE=30DGS--08-L05
TID=Os.6976.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.6976 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1344011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g13410Os.51183.1.S1_at11/119+7752372..7754377expressed protein
LOC_Os09g13420OsAffx.6261.1.S1_x_at11/119+7758918..7761038hypothetical protein
LOC_Os09g13430NANA9+7769806..7772168retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g13440OsAffx.29832.2.S1_s_at11/119+7772027..7776015expressed protein
LOC_Os09g13440OsAffx.29832.2.S1_at11/119+7772027..7776015expressed protein
LOC_Os09g13440Os.6976.2.A1_at11/119+7772027..7776015expressed protein
LOC_Os09g13440Os.6976.1.S1_s_at11/119+7772027..7776015expressed protein
LOC_Os09g13450OsAffx.17685.1.S1_at11/119+7778360..7778914hypothetical protein
LOC_Os09g13460OsAffx.17686.1.S1_at10/119+7780270..7781314hypothetical protein
LOC_Os09g13470Os.53954.1.S1_at11/119+7796868..7799107expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6976.1.S1_s_at--304--4651Chr09:7772408..7772432 (25 bp)
GCGGGCGCAGAAGAAACCCATAAGT
LOC_Os09g13440
Os.6976.1.S1_s_at--75--5351Chr09:7772399..7772423 (25 bp)
GAAGAAACCCATAAGTAACCATGAA
LOC_Os09g13440
Os.6976.1.S1_s_at--1129--2631Chr09:7772383..7772407 (25 bp)
AACCATGAATGGACGGCTTCTCTGT
LOC_Os09g13440
Os.6976.1.S1_s_at--892--8291Chr09:7772369..7772393 (25 bp)
GGCTTCTCTGTGTTGCGTACAAGCA
LOC_Os09g13440
Os.6976.1.S1_s_at--864--6671Chr09:7772358..7772382 (25 bp)
GTTGCGTACAAGCATTGTGGGCTCC
LOC_Os09g13440
Os.6976.1.S1_s_at--170--9851Chr09:7772352..7772376 (25 bp)
TACAAGCATTGTGGGCTCCAGTCAA
LOC_Os09g13440
Os.6976.1.S1_s_at--405--8651Chr09:7772343..7772367 (25 bp)
TGTGGGCTCCAGTCAAAGTACAAGA
LOC_Os09g13440
Os.6976.1.S1_s_at--234--1991Chr09:7772286..7772310 (25 bp)
ACTCCTACTCCTACATAGGAGTCCT
LOC_Os09g13440
Os.6976.1.S1_s_at--765--8031Chr09:7772269..7772293 (25 bp)
GGAGTCCTTCTGAATCTATTTGTGA
LOC_Os09g13440
Os.6976.1.S1_s_at--204--3971Chr09:7772214..7772238 (25 bp)
CGGTTTGTCGCGCAACTTCTTATAT
LOC_Os09g13440
Os.6976.1.S1_s_at--712--7231Chr09:7772208..7772232 (25 bp)
GTCGCGCAACTTCTTATATGTGTAT
LOC_Os09g13440
Target Sequence 
GCGGGCGCAGAAGAAACCCATAAGTAACCATGAATGGACGGCTTCTCTGTGTTGCGTACAAGCATTGTGGGCTCCAGTCA
AAGTACAAGACANATATACGGTGGATATATATATATANNNNCTCCTACTCCTACTCCTACATAGGAGTCCTTCTGAATCT
ATTTGTGATNGATTGTGTGACTGTAATCATATTGNAAACGGTTTGTCGCGCAACTTCTTATATGTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6976.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis