Browse Element(s) Details


Os.6998.1.S1_at

Description gb:CF304368
DB_XREF= gi:33676129
DB_XREF=ABF1--04-M15.g1
CLONE=ABF1--04-M15
TID=Os.6998.1
CNT=13
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.6998 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_188806.1 (A.thaliana) integral membrane protein, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3749011/11MATE efflux family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g37460NANA3+20725170..20725484hypothetical protein
LOC_Os03g37470OsAffx.25398.1.S1_x_at11/113+20727305..20737288MATE efflux family protein, expressed
LOC_Os03g37470Os.55033.1.A1_at10/113+20727305..20737288MATE efflux family protein, expressed
LOC_Os03g37490Os.6998.1.S1_at11/113+20747776..20754379MATE efflux family protein, expressed
LOC_Os03g37500NANA3+20759571..20766975retrotransposon protein, putative, unclassified
LOC_Os03g37520OsAffx.25399.1.S1_at11/113+20770570..20771257hypothetical protein
LOC_Os03g37540OsAffx.25401.1.S1_at11/113+20776641..20778676hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6998.1.S1_at--1131--9911Chr03:20750662..20750686 (25 bp)
TACGTCAACGTAGGCTGCTACTACA
LOC_Os03g37490
Os.6998.1.S1_at--978--8311Chr03:20750650..20750674 (25 bp)
GGCTGCTACTACATCGTCGGTATCC
LOC_Os03g37490
Os.6998.1.S1_at--1101--2171Chr03:20750276..20750300 (25 bp)
ACACTGATGCAGACCTTGATCCTTA
LOC_Os03g37490
Os.6998.1.S1_at--780--10771Chr03:20750261..20750285 (25 bp)
TTGATCCTTATGTGGGTCACCTTCA
LOC_Os03g37490
Os.6998.1.S1_at--623--7091Chr03:20750246..20750270 (25 bp)
GTCACCTTCAGGACCAACTGGAACA
LOC_Os03g37490
Os.6998.1.S1_at--833--2751Chr03:20748135..20748159 (25 bp)
AAGACACCTCTGTTGTCAGAATAAG
LOC_Os03g37490
Os.6998.1.S1_at--1121--9851Chr03:20748078..20748102 (25 bp)
TACACTGAGAGCCTACATGCCTAGA
LOC_Os03g37490
Os.6998.1.S1_at--483--9611Chr03:20748013..20748037 (25 bp)
TCATCGTGGAATTCATCATTGAGCC
LOC_Os03g37490
Os.6998.1.S1_at--627--2231Chr03:20747988..20748012 (25 bp)
ACAATGCTCTGTTACTTCTCGTTTC
LOC_Os03g37490
Os.6998.1.S1_at--458--2031Chr03:20747975..20747999 (25 bp)
ACTTCTCGTTTCTACTAGCGTACTA
LOC_Os03g37490
Os.6998.1.S1_at--541--5291Chr03:20747832..20747856 (25 bp)
GAATGGACTGGCTTATACAAATCTT
LOC_Os03g37490
Target Sequence 
TACGTCAACGTAGGCTGCTACTACATCGTCGGTATCCCCCTCGGCTGCCTCCTCGGCTTCTACTTCGACCTCGGCGCTGC
GGGTATTTGGAGCGGTATGATAGGAGGTACACTGATGCAGACCTTGATCCTTATGTGGGTCACCTTCAGGACCAACTGGA
ACAGAGAGGTGGAAGAAGCCATGAAAAGGTTGAACAAGTGGGAAGATAAGACACCTCTGTTGTCAGAATAAGAACAAAAC
AAAAGAAAAGGCTATTGTGGTTATTACACTGAGAGCCTACATGCCTAGAAGAAATGGGATTATGTGGGAAGTTCATAAAA
GGAGATTTTTCATCGTGGAATTCATCATTGAGCCACAATGCTCTGTTACTTCTCGTTTCTACTAGCGTACTAGTATTATT
TCGTTTTTGATGATCCTGTTTTACAGTTATGATGATGGAGATAATTTGATCATTTATTGAACTACANGTGAATTATTGGT
TATTTCTCATAAGCTTAAATTTTTGGGGGTGAATGGACTGGCTTATACAAATCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6998.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis