Browse Element(s) Details


Os.6999.1.S1_at

Description gb:AK073246.1
DB_XREF= gi:32983269
TID=Os.6999.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6999 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033005A18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033005A18, full insert sequence.
FL= gb:AK073246.1 gb:AK066192.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1949011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19480Os.37795.1.S1_at11/111+11055656..11060650Kelch motif family protein, expressed
LOC_Os01g19490Os.6999.1.S1_at11/111+11061634..11065552pentatricopeptide, putative, expressed
LOC_Os01g19500NANA1+11068258..11068569hypothetical protein
LOC_Os01g19510Os.31529.2.A1_at3/111+11072489..11072927hypothetical protein
LOC_Os01g19529Os.23685.1.S1_at11/111+11074984..11080260pentatricopeptide, putative, expressed
LOC_Os01g19529Os.23685.2.S1_x_at11/111+11074984..11080260pentatricopeptide, putative, expressed
LOC_Os01g19529Os.23685.1.S1_x_at11/111+11074984..11080260pentatricopeptide, putative, expressed
LOC_Os01g19529Os.23685.2.S1_at11/111+11074984..11080260pentatricopeptide, putative, expressed
LOC_Os01g19548Os.33440.1.S1_at11/111+11085843..11090765pentatricopeptide, putative, expressed
LOC_Os01g19548Os.51902.1.S1_at11/111+11085843..11090765pentatricopeptide, putative, expressed
LOC_Os01g19548Os.57167.1.S1_x_at5/111+11085843..11090765pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6999.1.S1_at--845--5791Chr01:11062199..11062223 (25 bp)
GACGCTGAAATGTTTATCCTCGGTA
LOC_Os01g19490
Os.6999.1.S1_at--1082--7751Chr01:11062161..11062185 (25 bp)
GGTGACACGTGATTCTTCGGCGAGC
LOC_Os01g19490
Os.6999.1.S1_at--856--10611Chr01:11062146..11062170 (25 bp)
TTCGGCGAGCGGCACAAAGCAGATT
LOC_Os01g19490
Os.6999.1.S1_at--642--311Chr01:11062069..11062093 (25 bp)
ATACCTCATGGCTAGGATGCTGTTC
LOC_Os01g19490
Os.6999.1.S1_at--94--10071Chr01:11061968..11061992 (25 bp)
TAGTCTTGTCTGAGGAGGCTTTTCT
LOC_Os01g19490
Os.6999.1.S1_at--431--9551Chr01:11061935..11061959 (25 bp)
TCTTTTTTGCTTACTTTCTGAACGA
LOC_Os01g19490
Os.6999.1.S1_at--540--851Chr01:11061909..11061933 (25 bp)
ATGGCTTCTCCAGACATACAGTACT
LOC_Os01g19490
Os.6999.1.S1_at--470--8771Chr01:11061854..11061878 (25 bp)
TGTTTCCATCTCTTGTAGTCAGTGT
LOC_Os01g19490
Os.6999.1.S1_at--78--7331Chr01:11061831..11061855 (25 bp)
GTGCTATCAGTTTGATGCCCTGACA
LOC_Os01g19490
Os.6999.1.S1_at--557--271Chr01:11061803..11061827 (25 bp)
ATATGTGCATGCTAGTCCCAAGTGT
LOC_Os01g19490
Os.6999.1.S1_at--942--9051Chr01:11061686..11061710 (25 bp)
TGCATAGGCTTCTGTCTTGTCATCC
LOC_Os01g19490
Target Sequence 
GACGCTGAAATGTTTATCCTCGGTAATTTTACTTTGTCGGTGACACGTGATTCTTCGGCGAGCGGCACAAAGCAGATTCG
TTTGAGTGAACTGTTCTCCCTTCTTCCTACTGCTCCATGTAGAGGATGATATACCTCATGGCTAGGATGCTGTTCCAGCC
TTTTCTTGCTTNTTTTTTTCAAGAAGCAGAGGCATGCTAGGGTAAAGGGTTTTTTCTTCAAGTGCAACGTGTAGTCTTGT
CTGAGGAGGCTTTTCTCCAACACTTCTTTTTTGCTTACTTTCTGAACGAAATGGCTTCTCCAGACATACAGTACTGAAGC
AAGAATCCTACTACAGAATCGTTGCTGTTTCCATCTCTTGTAGTCAGTGTGCTATCAGTTTGATGCCCTGACAATGATAT
GTGCATGCTAGTCCCAAGTGTGTTGTGGATAAGTCTTTGTGAACAGGAGAAGCCATTCGGACAGGAAGTAATTGCGTGCA
GAACGAGAGACAAGGCCTTTCAAGAGAACACCTTGCATAGGCTTCTGTCTTGTCATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6999.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis