Browse Element(s) Details


Os.57167.1.S1_x_at

Description gb:AK111062.1
DB_XREF= gi:32996271
TID=Os.57167.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57167 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-175-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-175-D09, full insert sequence.
FL= gb:AK111062.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g195485/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19490Os.6999.1.S1_at11/111+11061634..11065552pentatricopeptide, putative, expressed
LOC_Os01g19500NANA1+11068258..11068569hypothetical protein
LOC_Os01g19510Os.31529.2.A1_at3/111+11072489..11072927hypothetical protein
LOC_Os01g19529Os.23685.1.S1_at11/111+11074984..11080260pentatricopeptide, putative, expressed
LOC_Os01g19529Os.23685.2.S1_x_at11/111+11074984..11080260pentatricopeptide, putative, expressed
LOC_Os01g19529Os.23685.1.S1_x_at11/111+11074984..11080260pentatricopeptide, putative, expressed
LOC_Os01g19529Os.23685.2.S1_at11/111+11074984..11080260pentatricopeptide, putative, expressed
LOC_Os01g19548Os.33440.1.S1_at11/111+11085843..11090765pentatricopeptide, putative, expressed
LOC_Os01g19548Os.51902.1.S1_at11/111+11085843..11090765pentatricopeptide, putative, expressed
LOC_Os01g19548Os.57167.1.S1_x_at5/111+11085843..11090765pentatricopeptide, putative, expressed
LOC_Os01g19570OsAffx.11116.1.S1_at11/111+11091513..11091908hypothetical protein
LOC_Os01g19580OsAffx.11117.1.S1_at11/111+11092969..11095341hypothetical protein
LOC_Os01g19590Os.45976.1.S1_at2/111+11096797..11099398transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g19590Os.45976.1.S1_x_at1/111+11096797..11099398transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g19600Os.46306.1.S1_x_at1/111+11101997..11105326transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g19610Os.43094.1.S1_at10/111+11106590..11110321expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57167.1.S1_x_at--596--6751Chr12:14821461..14821485 (25 bp)
GTTCAAGCAGAACAGGCACGCCCTC
NONE
Os.57167.1.S1_x_at--316--9312Chr12:14821540..14821564 (25 bp)
TCCCGCGAAAACTCTGGCTTAATTT
NONE
Os.57167.1.S1_x_at--1099--1012Chr12:14821584..14821608 (25 bp)
AGGTTTCAGTCGATTGGATCCGGTT
NONE
Os.57167.1.S1_x_at--920--7952Chr12:14821599..14821623 (25 bp)
GGATCCGGTTGAAACTCCAATTGTT
NONE
Os.57167.1.S1_x_at--537--32Chr12:14821618..14821642 (25 bp)
ATTGTTTCGTCCTATCTACACTGTA
NONE
Os.57167.1.S1_x_at--764--10811Chr12:14821656..14821680 (25 bp)
TTGTGTCAACAACGGAACAACTCCG
NONE
Os.57167.1.S1_x_at--3--1552Chr12:14821694..14821718 (25 bp)
AGCATTTGCCAATATCTTAGGGAAC
NONE
Os.57167.1.S1_x_at--382--6811Chr12:14821754..14821778 (25 bp)
GTTTTCCTGTAATGCATGCAATGAA
NONE
Os.57167.1.S1_x_at--1121--9031Chr12:14821780..14821804 (25 bp)
TGCAGTTAGCCAGTTATCCAGTGTT
NONE
Os.57167.1.S1_x_at--81--4431Chr12:14821788..14821812 (25 bp)
GCCAGTTATCCAGTGTTGTTTAATC
NONE
Os.57167.1.S1_x_at--327--9751Chr12:14821808..14821832 (25 bp)
TAATCTGTGCAATCATTATGGTACA
NONE
Target Sequence 
GTTCAAGCAGAACAGGCACGCCCTCCAGGTGAGCCCCCTCACCCCCACCCCCCGGCACACACACCAGACCCCAGTCCCCT
CCCGCGAAAACTCTGGCTTAATTTGGATTGGGATGTAATGGTAAGGTTTCAGTCGATTGGATCCGGTTGAAACTCCAATT
GTTTCGTCCTATCTACACTGTATTTTAGGGTAATTTTGTGTCAACAACGGAACAACTCCGTTTGTAATATTATAGCATTT
GCCAATATCTTAGGGAACTATAATGTACTAGTAGTAATCTAGCAGCATAATGTGTTTTCCTGTAATGCATGCAATGAACT
GCAGTTAGCCAGTTATCCAGTGTTGTTTAATCTGTGCAATCATTATGGTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57167.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis