Browse Element(s) Details


Os.31529.2.A1_at

Description gb:NM_189200.1
DB_XREF= gi:34905483
GEN=P0682B08.17
TID=Os.31529.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.31529 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0682B08.17 (P0682B08.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0682B08.17 (P0682B08.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g195103/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19480Os.37795.1.S1_at11/111+11055656..11060650Kelch motif family protein, expressed
LOC_Os01g19490Os.6999.1.S1_at11/111+11061634..11065552pentatricopeptide, putative, expressed
LOC_Os01g19500NANA1+11068258..11068569hypothetical protein
LOC_Os01g19510Os.31529.2.A1_at3/111+11072489..11072927hypothetical protein
LOC_Os01g19529Os.23685.1.S1_at11/111+11074984..11080260pentatricopeptide, putative, expressed
LOC_Os01g19529Os.23685.2.S1_x_at11/111+11074984..11080260pentatricopeptide, putative, expressed
LOC_Os01g19529Os.23685.1.S1_x_at11/111+11074984..11080260pentatricopeptide, putative, expressed
LOC_Os01g19529Os.23685.2.S1_at11/111+11074984..11080260pentatricopeptide, putative, expressed
LOC_Os01g19548Os.33440.1.S1_at11/111+11085843..11090765pentatricopeptide, putative, expressed
LOC_Os01g19548Os.51902.1.S1_at11/111+11085843..11090765pentatricopeptide, putative, expressed
LOC_Os01g19548Os.57167.1.S1_x_at5/111+11085843..11090765pentatricopeptide, putative, expressed
LOC_Os01g19570OsAffx.11116.1.S1_at11/111+11091513..11091908hypothetical protein
LOC_Os01g19580OsAffx.11117.1.S1_at11/111+11092969..11095341hypothetical protein
LOC_Os01g19590Os.45976.1.S1_at2/111+11096797..11099398transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g19590Os.45976.1.S1_x_at1/111+11096797..11099398transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31529.2.A1_at--1158--1351Chr01:11072862..11072886 (25 bp)
AGAGAAGCTTAATTGCATTATGAGC
LOC_Os01g19510
Os.31529.2.A1_at--587--7091Chr01:11072796..11072820 (25 bp)
GTCAAATGAACAACCACTATCAGGG
LOC_Os01g19510
Os.31529.2.A1_at--986--10211Chr01:11072763..11072787 (25 bp)
TATTCTACCTATTCTTATCTACATT
LOC_Os01g19510
Os.31529.2.A1_at--1097--2071NONE
ACATTACAATAGCTGCACGGATCGC
NONE
Os.31529.2.A1_at--286--5831Chr01:11071987..11072011 (25 bp)
GACCGATCTGTCTCCCAAACGGATG
NONE
Os.31529.2.A1_at--189--9311Chr01:11071975..11071999 (25 bp)
TCCCAAACGGATGAGCGGCGCTTCA
NONE
Os.31529.2.A1_at--229--7551Chr01:11071823..11071847 (25 bp)
GTGGCGGCGGGCAGATGTTTGCAAT
NONE
Os.31529.2.A1_at--512--2753Chr07:15189654..15189677 (24 bp)
AAGAAACCCTGGAGAGAGAGGACAC
NONE
Os.31529.2.A1_at--184--7571Chr01:11071744..11071768 (25 bp)
GGGCGTTGGGCTTCACCCGATGACC
NONE
Os.31529.2.A1_at--733--6112Chr07:19301607..19301628 (22 bp)
GATGACCTTCTTATCCAACGGTTCA
NONE
Os.31529.2.A1_at--311--591Chr01:11071714..11071738 (25 bp)
ATCCAACGGTTCAGATGCGATCTCA
NONE
Target Sequence 
AGAGAAGCTTAATTGCATTATGAGCTGTTGCCAAGTCATCAATAACTTGCTGCTAGATGTGTCAATGTCAAATGAACAAC
CACTATCAGGGGCTGATGATATTCTACCTATTCTTATCTACATTACAATAGCTGCACGGATCGCCATCGCACCCACTTGC
CCTCCCACGACCGATCTGTCTCCCAAACGGATGAGCGGCGCTTCATGGCTTGGTGCGAATGGCCTCGTGGGCTCACGGCT
GGCGCGCACGGGGAATGCGGGGGGGGGGGGAGAGAGAGAGAAGCGAGCACGGCAACTGGCGCGTGCGGATGGGGGAGGAG
AAGCGAGCGCATGTGGCGGCGGGCAGATGTTTGCAATGCGGTGGAGGGTGAAGAAACCCTGGAGAGAGAGGACACGGGCC
GTGATGGGCTGGGGCGTTGGGCTTCACCCGATGACCTTCTTATCCAACGGTTCAGATGCGATCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31529.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis