Browse Element(s) Details


OsAffx.11117.1.S1_at

Description tigr:9629.m01912
TID=OsAffx.11117.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1958011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19500NANA1+11068258..11068569hypothetical protein
LOC_Os01g19510Os.31529.2.A1_at3/111+11072489..11072927hypothetical protein
LOC_Os01g19529Os.23685.1.S1_at11/111+11074984..11080260pentatricopeptide, putative, expressed
LOC_Os01g19529Os.23685.2.S1_x_at11/111+11074984..11080260pentatricopeptide, putative, expressed
LOC_Os01g19529Os.23685.1.S1_x_at11/111+11074984..11080260pentatricopeptide, putative, expressed
LOC_Os01g19529Os.23685.2.S1_at11/111+11074984..11080260pentatricopeptide, putative, expressed
LOC_Os01g19548Os.33440.1.S1_at11/111+11085843..11090765pentatricopeptide, putative, expressed
LOC_Os01g19548Os.51902.1.S1_at11/111+11085843..11090765pentatricopeptide, putative, expressed
LOC_Os01g19548Os.57167.1.S1_x_at5/111+11085843..11090765pentatricopeptide, putative, expressed
LOC_Os01g19570OsAffx.11116.1.S1_at11/111+11091513..11091908hypothetical protein
LOC_Os01g19580OsAffx.11117.1.S1_at11/111+11092969..11095341hypothetical protein
LOC_Os01g19590Os.45976.1.S1_at2/111+11096797..11099398transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g19590Os.45976.1.S1_x_at1/111+11096797..11099398transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g19600Os.46306.1.S1_x_at1/111+11101997..11105326transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g19610Os.43094.1.S1_at10/111+11106590..11110321expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11117.1.S1_at--508--991Chr01:11094078..11094102 (25 bp)
AGGAGGATGGCGACATTGCTTGCTA
LOC_Os01g19580
OsAffx.11117.1.S1_at--518--71Chr01:11094092..11094116 (25 bp)
ATTGCTTGCTACTGTGCGGATGGGA
LOC_Os01g19580
OsAffx.11117.1.S1_at--171--9071Chr01:11094277..11094301 (25 bp)
TGCATAGCAACCTCTTGCTTGTGTT
LOC_Os01g19580
OsAffx.11117.1.S1_at--684--9751Chr01:11094372..11094396 (25 bp)
TAATGACGGAGACGCTATCACATGC
LOC_Os01g19580
OsAffx.11117.1.S1_at--45--5731Chr01:11094408..11094432 (25 bp)
GACTCCGGGTGAAAGGCCTAGTCCT
LOC_Os01g19580
OsAffx.11117.1.S1_at--472--10331Chr01:11094432..11094456 (25 bp)
TTTTCGGGCCACTAGTGACGACACT
LOC_Os01g19580
OsAffx.11117.1.S1_at--1129--8931Chr01:11094447..11094471 (25 bp)
TGACGACACTCTTGGGCACTGTAAC
LOC_Os01g19580
OsAffx.11117.1.S1_at--713--7451Chr01:11094493..11094517 (25 bp)
GTGTCTCTCCTCTCTATGGTTGAAT
LOC_Os01g19580
OsAffx.11117.1.S1_at--350--9011Chr01:11094513..11094537 (25 bp)
TGAATCCTCAGGTGAAAGCCACGCC
LOC_Os01g19580
OsAffx.11117.1.S1_at--96--8411Chr01:11094561..11094585 (25 bp)
GGCGCCATTGGCATTGCAACCTCTA
LOC_Os01g19580
OsAffx.11117.1.S1_at--499--5131Chr01:11094576..11094600 (25 bp)
GCAACCTCTAGAGAAGCTTCGTTTG
LOC_Os01g19580
Target Sequence 
AGGAGGATGGCGACATTGCTTGCTACTGTGCGGATGGGAGGAAACAACTTCGACAATGACCGGGGAAGTGCGGAGGCGGC
CCTCTTGCATAGCAACCTCTTGCTTGTGTTTGTCGAGCATTGGTGGGGTGGTGGTGCTCGGAGAGTGGAGGTTGCTAGTA
ATGACGGAGACGCTATCACATGCGAGGGTTGGGAGACTCCGGGTGAAAGGCCTAGTCCTTTTCGGGCCACTAGTGACGAC
ACTCTTGGGCACTGTAACCCTGTTAGGGGCATTGTCGTGGTGTCTCTCCTCTCTATGGTTGAATCCTCAGGTGAAAGCCA
CGCCCTGGTTCCTAGGACGGGCGACGGGGCGCCATTGGCATTGCAACCTCTAGAGAAGCTTCGTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11117.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis