Browse Element(s) Details


Os.43094.1.S1_at

Description gb:NM_189205.1
DB_XREF= gi:34905493
GEN=P0035H10.3
TID=Os.43094.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.43094 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (P0035H10.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (P0035H10.3), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1961010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19548Os.33440.1.S1_at11/111+11085843..11090765pentatricopeptide, putative, expressed
LOC_Os01g19548Os.51902.1.S1_at11/111+11085843..11090765pentatricopeptide, putative, expressed
LOC_Os01g19548Os.57167.1.S1_x_at5/111+11085843..11090765pentatricopeptide, putative, expressed
LOC_Os01g19570OsAffx.11116.1.S1_at11/111+11091513..11091908hypothetical protein
LOC_Os01g19580OsAffx.11117.1.S1_at11/111+11092969..11095341hypothetical protein
LOC_Os01g19590Os.45976.1.S1_at2/111+11096797..11099398transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g19590Os.45976.1.S1_x_at1/111+11096797..11099398transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g19600Os.46306.1.S1_x_at1/111+11101997..11105326transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g19610Os.43094.1.S1_at10/111+11106590..11110321expressed protein
LOC_Os01g19620NANA1+11121539..11124701retrotransposon protein, putative, unclassified
LOC_Os01g19630Os.6182.1.S1_at11/111+11126298..11128654expressed protein
LOC_Os01g19630Os.17611.1.S1_at1/111+11126298..11128654expressed protein
LOC_Os01g19640NANA1+11133971..11135023hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43094.1.S1_at--958--7351Chr01:11109334..11109358 (25 bp)
GTGAAGCTGCCGAACATCCCGAGCG
LOC_Os01g19610
Os.43094.1.S1_at--491--551Chr01:11109319..11109343 (25 bp)
ATCCCGAGCGCGACGGACCTGCAGA
LOC_Os01g19610
Os.43094.1.S1_at--525--5631Chr01:11109220..11109244 (25 bp)
GACACGCTGGTGATCCCCATGGTGA
LOC_Os01g19610
Os.43094.1.S1_at--1098--7391Chr01:11109211..11109235 (25 bp)
GTGATCCCCATGGTGAACATCGAGC
LOC_Os01g19610
Os.43094.1.S1_at--1018--3211Chr01:11109038..11109062 (25 bp)
CAAGAGCAACCTCGGCAGCCACAAG
LOC_Os01g19610
Os.43094.1.S1_at--1031--2171NONE
ACAAGGCGGTGGTGACCTACTTCAA
NONE
Os.43094.1.S1_at--779--1051Chr01:11107170..11107194 (25 bp)
AGGTGGAAGGCAACTACCTGCGGTC
LOC_Os01g19610
Os.43094.1.S1_at--406--2531Chr01:11107159..11107183 (25 bp)
AACTACCTGCGGTCCGTGTTCGAGG
LOC_Os01g19610
Os.43094.1.S1_at--120--8551Chr01:11107128..11107152 (25 bp)
TGGAGCGCAACAGGAACCCCATGTA
LOC_Os01g19610
Os.43094.1.S1_at--650--2071Chr01:11107119..11107143 (25 bp)
ACAGGAACCCCATGTACGCCTGGAT
LOC_Os01g19610
Os.43094.1.S1_at--232--8571Chr01:11107099..11107123 (25 bp)
TGGATCCGCACCCTGAGGAAGAAGT
LOC_Os01g19610
Target Sequence 
GTGAAGCTGCCGAACATCCCGAGCGCGACGGACCTGCAGAGGGTGGGGATCAAGTTCAAGCGGGCGCCGAGGAAGCCCGA
CGGCGGGTTCCTGGACGTGCGGCTGGAGGACGGCGACACGCTGGTGATCCCCATGGTGAACATCGAGCAGTTCACGGCGC
CGCAGCTGCAGAACCTCATCGCGCTGGAGCAGGCCACGCCGGAGCTCCCCGACGACTGCTCCTGCTACGCCTTCTTCATG
GACAACCTCGTCGCCAACCCGGCCGACGTCGCGCTGCTCGAGTCCGAGGGCATCCTCAAGAGCAACCTCGGCAGCCACAA
GGCGGTGGTGACCTACTTCAACAAGCTGTGCAAGGGGAACAAGCTGGAGGTGGAAGGCAACTACCTGCGGTCCGTGTTCG
AGGCGCTGATGGAGCGCAACAGGAACCCCATGTACGCCTGGATCCGCACCCTGAGGAAGAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43094.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis