Browse Element(s) Details


Os.6182.1.S1_at

Description gb:AK100875.1
DB_XREF= gi:32986084
TID=Os.6182.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6182 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST C91752(E31469)~unknown protein (P0035H10.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023126J21, full insert sequence.
FL= gb:AK100875.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1963011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19600Os.46306.1.S1_x_at1/111+11101997..11105326transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g19610Os.43094.1.S1_at10/111+11106590..11110321expressed protein
LOC_Os01g19620NANA1+11121539..11124701retrotransposon protein, putative, unclassified
LOC_Os01g19630Os.6182.1.S1_at11/111+11126298..11128654expressed protein
LOC_Os01g19630Os.17611.1.S1_at1/111+11126298..11128654expressed protein
LOC_Os01g19640NANA1+11133971..11135023hypothetical protein
LOC_Os01g19650NANA1+11138900..11144959retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g19660Os.46995.1.S1_x_at1/111+11145314..11148236retrotransposon protein, putative, unclassified
LOC_Os01g19670NANA1+11152091..11152558expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6182.1.S1_at--1021--391Chr01:11127958..11127982 (25 bp)
ATCAGCATCTGCAATGTGCACTTTG
LOC_Os01g19630
Os.6182.1.S1_at--907--5171Chr01:11127968..11127992 (25 bp)
GCAATGTGCACTTTGGCAGGTGGAT
LOC_Os01g19630
Os.6182.1.S1_at--1107--2491Chr01:11128199..11128223 (25 bp)
AACATGTCCTTAATCAACGCTCGTC
LOC_Os01g19630
Os.6182.1.S1_at--1161--8851Chr01:11128252..11128276 (25 bp)
TGATGCAGAGATGTCAACCCCTTCA
LOC_Os01g19630
Os.6182.1.S1_at--599--1311Chr01:11128260..11128284 (25 bp)
AGATGTCAACCCCTTCATCAACGCT
LOC_Os01g19630
Os.6182.1.S1_at--955--7371Chr01:11128315..11128339 (25 bp)
GTGATGCCGAGATGTCAACCCAGGA
LOC_Os01g19630
Os.6182.1.S1_at--723--891Chr01:11128375..11128399 (25 bp)
AGGCGATGCCCTCTAGACTGATTTT
LOC_Os01g19630
Os.6182.1.S1_at--99--10353Chr12:21104204..21104702 (25 bp)
TTTACTGCCTTATATATCAGGCCCA
NONE
Os.6182.1.S1_at--933--10151Chr01:11128511..11128535 (25 bp)
TATCAGGCCCAATCAATTACTAAGT
LOC_Os01g19630
Os.6182.1.S1_at--336--10351Chr01:11128539..11128563 (25 bp)
TTTTTTACTCCCTCTATGATTGGAT
LOC_Os01g19630
Os.6182.1.S1_at--306--4191Chr01:11128548..11128572 (25 bp)
CCCTCTATGATTGGATGATTCGAAT
LOC_Os01g19630
Target Sequence 
ATCAGCATCTGCAATGTGCACTTTGGCAGGTGGATGCACATCTTGATGGCATGGTGGAAACTAGAAAAGAACATGAGAAG
ATTAAGCCAGTGGTGGTGGTGCCACTGGAATGCCATCCTGGTCATTATCCTCAACATGTCCTTAATCAACGCTCGTCGCC
GGCGGCCAACACCAAAGGGCAGGGGTGATGCAGAGATGTCAACCCCTTCATCAACGCTCGTCGCCGGCGGCCAACACAAA
GGGCAGGGGTGATGCCGAGATGTCAACCCAGGACGAGCACACCACAATTGATGACCTGCTTCGGTGGCAGGCGATGCCCT
CTAGACTGATTTTTTTGGTACCGAGTGTATATGTGTGTTTGTAACGATAATGGCACGATCAATTGTAAAAACAAAAAACC
ATTATACCCGTATTCTAGTGCAGTAAAATATTTACTGCCTTATATATCAGGCCCAATCAATTACTAAGTAACTTTTTTAC
TCCCTCTATGATTGGATGATTCGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6182.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis