Browse Element(s) Details


Os.7029.1.S1_at

Description gb:AK058638.1
DB_XREF= gi:32968656
TID=Os.7029.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.7029 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-018-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-018-D08, full insert sequence.
FL= gb:AK058638.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2465011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g24620Os.14491.2.S1_x_at4/115+14140068..14149337transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g24620Os.47463.1.S1_x_at3/115+14140068..14149337transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g24630OsAffx.27003.1.S1_at11/115+14152766..14154461hypothetical protein
LOC_Os05g24640NANA5+14155108..14158217retrotransposon protein, putative, LINE subclass
LOC_Os05g24650Os.7029.1.S1_at11/115+14166965..14168285expressed protein
LOC_Os05g24660OsAffx.14808.1.S1_at11/115+14183400..14184425IPP transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7029.1.S1_at--516--1291Chr05:14167773..14167797 (25 bp)
AGATGCACGCCTCGTGAAAGCTTCG
LOC_Os05g24650
Os.7029.1.S1_at--918--2351Chr05:14167829..14167853 (25 bp)
AAAGCTCCCTGCACCACAGCTGTGT
LOC_Os05g24650
Os.7029.1.S1_at--810--2151Chr05:14167844..14167868 (25 bp)
ACAGCTGTGTGCCACAAGGAACAAA
LOC_Os05g24650
Os.7029.1.S1_at--912--8151Chr05:14167861..14167885 (25 bp)
GGAACAAAAATCTCCTTGTTTCTTG
LOC_Os05g24650
Os.7029.1.S1_at--549--3611Chr05:14167882..14167906 (25 bp)
CTTGAGAGCTCAAGACACCTCCTCT
LOC_Os05g24650
Os.7029.1.S1_at--1051--3511Chr05:14167946..14167970 (25 bp)
CATGAGCTGAGATGATCAATCTGCA
LOC_Os05g24650
Os.7029.1.S1_at--476--5791Chr05:14168004..14168028 (25 bp)
GACGCTTTTATGGTTTCGGGTTCAG
LOC_Os05g24650
Os.7029.1.S1_at--976--571Chr05:14168062..14168086 (25 bp)
ATCCAGAGGTGTTCTATAAGTGCCA
LOC_Os05g24650
Os.7029.1.S1_at--728--10171Chr05:14168076..14168100 (25 bp)
TATAAGTGCCAGGTTTTCGGATTTT
LOC_Os05g24650
Os.7029.1.S1_at--599--4431Chr05:14168123..14168147 (25 bp)
GCACTTAAGGTTGGTACTTTGGTAG
LOC_Os05g24650
Os.7029.1.S1_at--903--7851Chr05:14168143..14168167 (25 bp)
GGTAGGGCAGATGATCCAAGATCTT
LOC_Os05g24650
Target Sequence 
AGATGCACGCCTCGTGAAAGCTTCGCGCGCCCTCCCCCTGCCGCTGCACGAATCTCAAAGCTCCCTGCACCACAGCTGTG
TGCCACAAGGAACAAAAATCTCCTTGTTTCTTGAGAGCTCAAGACACCTCCTCTCTTTTTTATGCTTCAAGATTAGCAAA
GTTATGAATCACTCATGAGCTGAGATGATCAATCTGCAGCTATAGCAGAAGCATTTTTTATGTAGGGGTGTGACGCTTTT
ATGGTTTCGGGTTCAGGATTTAGGGTTAAGAATCGGACGATGGATGGGTATCCAGAGGTGTTCTATAAGTGCCAGGTTTT
CGGATTTTAAGTTAGTGAAAACAAAACTGTGCACTTAAGGTTGGTACTTTGGTAGGGCAGATGATCCAAGATCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7029.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis