Browse Element(s) Details


OsAffx.27003.1.S1_at

Description tigr:9633.m02200
TID=OsAffx.27003.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2463011/11hypothetical protein
LOC_Os09g142601/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g24620Os.14491.2.S1_x_at4/115+14140068..14149337transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g24620Os.47463.1.S1_x_at3/115+14140068..14149337transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g24630OsAffx.27003.1.S1_at11/115+14152766..14154461hypothetical protein
LOC_Os05g24640NANA5+14155108..14158217retrotransposon protein, putative, LINE subclass
LOC_Os05g24650Os.7029.1.S1_at11/115+14166965..14168285expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27003.1.S1_at--430--6731Chr05:14154129..14154153 (25 bp)
GTTCTCATGGATCCTAACCGGTCAA
LOC_Os05g24630
OsAffx.27003.1.S1_at--315--9791Chr05:14154143..14154167 (25 bp)
TAACCGGTCAAGTGGGTACAACAAT
LOC_Os05g24630
OsAffx.27003.1.S1_at--827--6951Chr05:14154158..14154182 (25 bp)
GTACAACAATTTCTTGAAGGATCCC
LOC_Os05g24630
OsAffx.27003.1.S1_at--508--2651Chr05:14154205..14154229 (25 bp)
AAGCCTCCACCCAAAGCGATTTTTG
LOC_Os05g24630
OsAffx.27003.1.S1_at--963--2351Chr05:14154217..14154241 (25 bp)
AAAGCGATTTTTGTCATCCCCACGA
LOC_Os05g24630
OsAffx.27003.1.S1_at--1119--5151Chr05:14154300..14154324 (25 bp)
GCAACCGGCAATGGTGGCCTGACAT
LOC_Os05g24630
OsAffx.27003.1.S1_at--268--8951Chr05:14154319..14154343 (25 bp)
TGACATTGGCCTCCATATCTAGGGT
LOC_Os05g24630
OsAffx.27003.1.S1_at--415--4331Chr05:14154331..14154355 (25 bp)
CCATATCTAGGGTGAGGCAGCGTGT
LOC_Os05g24630
OsAffx.27003.1.S1_at--831--8251Chr05:14154346..14154370 (25 bp)
GGCAGCGTGTGCAGGCAAATCCAGT
LOC_Os05g24630
OsAffx.27003.1.S1_at--596--3031Chr05:14154363..14154387 (25 bp)
AATCCAGTCAGCCAAGACGATGGGA
LOC_Os05g24630
OsAffx.27003.1.S1_at--346--4612Chr05:14154390..14154414 (25 bp)
GCGAGGATGTACTACACTCATGATG
LOC_Os05g24630
Target Sequence 
GTTCTCATGGATCCTAACCGGTCAAGTGGGTACAACAATTTCTTGAAGGATCCCGATCTGGTGCACCCCTTCGGTCAAGC
CTCCACCCAAAGCGATTTTTGTCATCCCCACGACGACTTCCCCAACGCTCATGCTCAGTTTCCCCCCTTCTCTACCCAGC
CACCACCACTAGCAACCGGCAATGGTGGCCTGACATTGGCCTCCATATCTAGGGTGAGGCAGCGTGTGCAGGCAAATCCA
GTCAGCCAAGACGATGGGAAGGCGAGGATGTACTACACTCATGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27003.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis