Browse Element(s) Details


Os.7173.1.S1_at

Description gb:AK103230.1
DB_XREF= gi:32988439
TID=Os.7173.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7173 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033123D13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033123D13, full insert sequence.
FL= gb:AK103230.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0820011/11Ubiquitin carboxyl-terminal hydrolase 14, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08170OsAffx.21565.1.S1_at11/111+3955424..3958705hypothetical protein
LOC_Os01g08170OsAffx.26278.1.S1_x_at2/111+3955424..3958705hypothetical protein
LOC_Os01g08180OsAffx.23159.1.S1_at7/111+3959267..3960370hypothetical protein
LOC_Os01g08190Os.23654.2.S1_x_at11/111+3972721..3981713Transcriptional corepressor LEUNIG, putative, expressed
LOC_Os01g08190Os.23654.1.S1_at11/111+3972721..3981713Transcriptional corepressor LEUNIG, putative, expressed
LOC_Os01g08190Os.10429.1.S1_at1/111+3972721..3981713Transcriptional corepressor LEUNIG, putative, expressed
LOC_Os01g08200Os.7173.1.S1_s_at11/111+3983449..3992200Ubiquitin carboxyl-terminal hydrolase 14, putative, expressed
LOC_Os01g08200Os.7173.1.S1_at11/111+3983449..3992200Ubiquitin carboxyl-terminal hydrolase 14, putative, expressed
LOC_Os01g08209NANA1+3998223..3998416NA
LOC_Os01g08220NANA1+4000461..4001748oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g08229NANA1+4004285..4004452NA

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Gene Ontology Classification
GO idTypeName
GO:0006512biological_processubiquitin cycle
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0004843molecular_functionubiquitin-specific protease activity
GO:0008581molecular_functionubiquitin-specific protease 5 activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7173.1.S1_at--399--4331Chr01:3992064..3992088 (25 bp)
CCATGAAAACTTTGGACTGGCTCAA
LOC_Os01g08200
Os.7173.1.S1_at--1021--5511Chr01:3992068..3992092 (25 bp)
GAAAACTTTGGACTGGCTCAACTTT
LOC_Os01g08200
Os.7173.1.S1_at--376--3671Chr01:3992073..3992097 (25 bp)
CTTTGGACTGGCTCAACTTTTTACA
LOC_Os01g08200
Os.7173.1.S1_at--954--8111Chr01:3992077..3992101 (25 bp)
GGACTGGCTCAACTTTTTACATATG
LOC_Os01g08200
Os.7173.1.S1_at--988--8312Chr01:3992082..3992106 (25 bp)
GGCTCAACTTTTTACATATGAAATG
LOC_Os01g08200
Os.7173.1.S1_at--866--2871Chr01:3992120..3992144 (25 bp)
AAGGGACGGTCCCTGATGCCGCATA
LOC_Os01g08200
Os.7173.1.S1_at--186--1931Chr01:3992125..3992149 (25 bp)
ACGGTCCCTGATGCCGCATATATAT
LOC_Os01g08200
Os.7173.1.S1_at--866--6351Chr01:3992134..3992158 (25 bp)
GATGCCGCATATATATTTTGCACAT
LOC_Os01g08200
Os.7173.1.S1_at--1126--10731Chr01:3992151..3992175 (25 bp)
TTGCACATTGTAGCAGAGCGCTGGG
LOC_Os01g08200
Os.7173.1.S1_at--345--3611Chr01:3992156..3992180 (25 bp)
CATTGTAGCAGAGCGCTGGGTGTTA
LOC_Os01g08200
Os.7173.1.S1_at--285--5051Chr01:3992163..3992187 (25 bp)
GCAGAGCGCTGGGTGTTAAAAGATT
LOC_Os01g08200
Target Sequence 
CCATGAAAACTTTGGACTGGCTCAACTTTTTACATATGAAATGGAAAACAAAAGGCAAGGGACGGTCCCTGATGCCGCAT
ATATATTTTGCACATTGTAGCAGAGCGCTGGGTGTTAAAAGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7173.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis