Browse Element(s) Details


Os.7223.1.S1_at

Description gb:AK100520.1
DB_XREF= gi:32985729
TID=Os.7223.1
CNT=16
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.7223 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-045-G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023100J17, full insert sequence.
FL= gb:AK104894.1 gb:AK100201.1 gb:AK100520.1 gb:AK099633.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2459411/11Coatomer delta subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g24540OsAffx.27002.1.S1_at11/115+14078275..14078733hypothetical protein
LOC_Os05g24550Os.8744.1.S1_a_at6/115+14083606..14087136Papain family cysteine protease containing protein, expressed
LOC_Os05g24560NANA5+14087688..14090121NC domain-containing protein, putative, expressed
LOC_Os05g24570OsAffx.14807.1.S1_at11/115+14092869..14093741hypothetical protein
LOC_Os05g24580NANA5+14095652..14100295hypothetical protein
LOC_Os05g24594Os.7223.1.S1_at11/115+14103338..14119202Coatomer delta subunit, putative, expressed
LOC_Os05g24594Os.9802.1.S1_at11/115+14103338..14119202Coatomer delta subunit, putative, expressed
LOC_Os05g24594OsAffx.1755.1.S1_at2/115+14103338..14119202Coatomer delta subunit, putative, expressed
LOC_Os05g24594OsAffx.1755.1.S1_x_at2/115+14103338..14119202Coatomer delta subunit, putative, expressed
LOC_Os05g24610OsAffx.8052.1.S1_at7/115+14120267..14127447retrotransposon protein, putative, LINE subclass
LOC_Os05g24620Os.14491.2.S1_x_at4/115+14140068..14149337transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g24620Os.47463.1.S1_x_at3/115+14140068..14149337transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7223.1.S1_at--411--8731Chr05:14117767..14117791 (25 bp)
TGTCATATCTATACCATTGCCTGCA
LOC_Os05g24594
Os.7223.1.S1_at--538--10171Chr05:14117776..14117800 (25 bp)
TATACCATTGCCTGCACTTCGGGAG
LOC_Os05g24594
Os.7223.1.S1_at--544--6131Chr05:14118951..14118975 (25 bp)
GAGGGCTCGTTTGGTAACAGCCAAT
LOC_Os05g24594
Os.7223.1.S1_at--692--7831Chr05:14118963..14118987 (25 bp)
GGTAACAGCCAATTATCAAGTGGTT
LOC_Os05g24594
Os.7223.1.S1_at--676--1071Chr05:14119001..14119025 (25 bp)
AGGGAGATTACCTCACTTCAGCACA
LOC_Os05g24594
Os.7223.1.S1_at--155--10531Chr05:14119017..14119041 (25 bp)
TTCAGCACACATGTTTGCGGGCATT
LOC_Os05g24594
Os.7223.1.S1_at--43--9151Chr05:14119032..14119056 (25 bp)
TGCGGGCATTTCCTTTCGGCAATGA
LOC_Os05g24594
Os.7223.1.S1_at--753--191Chr05:14119039..14119063 (25 bp)
ATTTCCTTTCGGCAATGAGCTGTTT
LOC_Os05g24594
Os.7223.1.S1_at--833--3131Chr05:14119109..14119133 (25 bp)
AATTTTGTCTGTTTCATATGTAGTA
LOC_Os05g24594
Os.7223.1.S1_at--835--4731Chr05:14119151..14119175 (25 bp)
GCTGTTAATTTGTACTGCCACCTGA
LOC_Os05g24594
Os.7223.1.S1_at--868--10251Chr05:14119159..14119183 (25 bp)
TTTGTACTGCCACCTGATGAGAAAT
LOC_Os05g24594
Target Sequence 
TGTCATATCTATACCATTGCCTGCACTTCGGGAGGCTCCGAGTGTTAGACAGATTGATGGAGAGTGGAGGTATGATTCGA
GAAACTCCGTGTTGGAATGGTCCATTCTTCTTATCGATCAGTCAAACCGCAGTGGCTCCATGGAATTTGTTGTCCCCCCA
GCTGATCCATCAACATTTTTCCCCATATCAATTGGATTTTCCGCATCTAGTACATTCAGCGATTTGAAGGTTACTGGAAT
TCGTCCTCTAAAGGATGGTAACCCACCAAAGTATTCGCAGAGGGCTCGTTTGGTAACAGCCAATTATCAAGTGGTTTAAC
GCCCAAATAAGGGAGATTACCTCACTTCAGCACACATGTTTGCGGGCATTTCCTTTCGGCAATGAGCTGTTTAGAAGTCA
TGGAGAAGAAGGATTGTTTTGCATTTATAAAGAATGTAATTTTGTCTGTTTCATATGTAGTAACATGTTTCACCAAATTG
CTGTTAATTTGTACTGCCACCTGATGAGAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7223.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis