Browse Element(s) Details


Os.8744.1.S1_a_at

Description gb:AK101093.1
DB_XREF= gi:32986302
TID=Os.8744.1
CNT=76
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.8744 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033024N03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033024N03, full insert sequence.
FL= gb:AK064820.1 gb:AK100225.1 gb:AK101093.1 gb:AK059697.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g245506/11Papain family cysteine protease containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g24500OsAffx.14806.1.S1_at11/115+14062055..14063408Terpene synthase, N-terminal domain containing protein, expressed
LOC_Os05g24510NANA5+14068004..14068210hypothetical protein
LOC_Os05g24520OsAffx.22699.1.S1_x_at4/115+14069318..14073927retrotransposon protein, putative, unclassified
LOC_Os05g24530OsAffx.2133.1.S1_at1/115+14074586..14076298hypothetical protein
LOC_Os05g24540OsAffx.27002.1.S1_at11/115+14078275..14078733hypothetical protein
LOC_Os05g24550Os.8744.1.S1_a_at6/115+14083606..14087136Papain family cysteine protease containing protein, expressed
LOC_Os05g24560NANA5+14087688..14090121NC domain-containing protein, putative, expressed
LOC_Os05g24570OsAffx.14807.1.S1_at11/115+14092869..14093741hypothetical protein
LOC_Os05g24580NANA5+14095652..14100295hypothetical protein
LOC_Os05g24594Os.7223.1.S1_at11/115+14103338..14119202Coatomer delta subunit, putative, expressed
LOC_Os05g24594Os.9802.1.S1_at11/115+14103338..14119202Coatomer delta subunit, putative, expressed
LOC_Os05g24594OsAffx.1755.1.S1_at2/115+14103338..14119202Coatomer delta subunit, putative, expressed
LOC_Os05g24594OsAffx.1755.1.S1_x_at2/115+14103338..14119202Coatomer delta subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8744.1.S1_a_at--439--1311Chr05:14086146..14086170 (25 bp)
AGAGGTCTACCAAAATGGCCCTGTA
LOC_Os05g24550
Os.8744.1.S1_a_at--258--5351Chr05:14086171..14086195 (25 bp)
GAAGTTGCTTTCACCGTTTATGAGG
LOC_Os05g24550
Os.8744.1.S1_a_at--833--8871Chr05:14086714..14086738 (25 bp)
TGATGGGTGGTCATGCTGTCAAGTT
LOC_Os05g24550
Os.8744.1.S1_a_at--814--8371Chr05:14086764..14086879 (25 bp)
GGCGAGGATTACTGGCTGCTTGCAA
LOC_Os05g24550
Os.8744.1.S1_a_at--530--9131Chr05:14087061..14087085 (25 bp)
TGCTGGTATGCCCTCGACGAAGAAC
LOC_Os05g24550
Os.8744.1.S1_a_at--937--10091Chr05:14087098..14087122 (25 bp)
TATGATAGCGCCTTCGGAGTCGGAA
LOC_Os05g24550
Os.8744.1.S1_a_at--337--9452Chr05:14087117..14087141 (25 bp)
TCGGAACGGCCATAGTTTGACTTTA
NONE
Os.8744.1.S1_a_at--209--2931Chr05:14087151..14087175 (25 bp)
AATGGCCTCAAATACGGTTGGGATC
NONE
Os.8744.1.S1_a_at--713--6531Chr05:14087195..14087219 (25 bp)
GATTTCTGGATTTTGCACACACGGG
NONE
Os.8744.1.S1_a_at--963--2171Chr05:14087213..14087237 (25 bp)
ACACGGGCAGGCTTCTCGAGACTGA
NONE
Os.8744.1.S1_a_at--940--6391Chr05:14087236..14087260 (25 bp)
GATCGGAGTTTAGGCTACTTGTCCA
NONE
Target Sequence 
AGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGGATTTTGCACACTACAAATCAGGAGTATACA
AGCACATCACAGGTGGCATGATGGGTGGTCATGCTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTAC
TGGCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGATGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGG
CATCGAAGAAGATGTTGTTGCTGGTATGCCCTCGACGAAGAACATGGTGAGGAACTATGATAGCGCCTTCGGAGTCGGAA
CGGCCATAGTTTGACTTTAATCAATGTTAATGGCCTCAAATACGGTTGGGATCATGTAAATTTGTCCTGGGTGATTTCTG
GATTTTGCACACACGGGCAGGCTTCTCGAGACTGATCGGAGTTTAGGCTACTTGTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8744.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis