Browse Element(s) Details


OsAffx.14806.1.S1_at

Description tigr:9633.m02186
TID=OsAffx.14806.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Terpene synthase, N-terminal domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2450011/11Terpene synthase, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g24450OsAffx.27000.1.S1_at11/115+14037768..14038751hypothetical protein
LOC_Os05g24460OsAffx.22492.1.S1_at1/115+14039990..14046146retrotransposon protein, putative, unclassified
LOC_Os05g24460OsAffx.22492.1.S1_x_at1/115+14039990..14046146retrotransposon protein, putative, unclassified
LOC_Os05g24470Os.31312.5.S1_x_at5/115+14046780..14050039retrotransposon protein, putative, unclassified
LOC_Os05g24470Os.31312.2.S1_x_at4/115+14046780..14050039retrotransposon protein, putative, unclassified
LOC_Os05g24480OsAffx.14805.1.S1_at9/115+14051946..14052833hypothetical protein
LOC_Os05g24490OsAffx.4415.1.S1_at11/115+14056263..14056935hypothetical protein
LOC_Os05g24500OsAffx.14806.1.S1_at11/115+14062055..14063408Terpene synthase, N-terminal domain containing protein, expressed
LOC_Os05g24510NANA5+14068004..14068210hypothetical protein
LOC_Os05g24520OsAffx.22699.1.S1_x_at4/115+14069318..14073927retrotransposon protein, putative, unclassified
LOC_Os05g24530OsAffx.2133.1.S1_at1/115+14074586..14076298hypothetical protein
LOC_Os05g24540OsAffx.27002.1.S1_at11/115+14078275..14078733hypothetical protein
LOC_Os05g24550Os.8744.1.S1_a_at6/115+14083606..14087136Papain family cysteine protease containing protein, expressed
LOC_Os05g24560NANA5+14087688..14090121NC domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0016099biological_processmonoterpenoid biosynthesis
GO:0016106biological_processsesquiterpenoid biosynthesis
GO:0042408molecular_functionmyrcene/(E)-beta-ocimene synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14806.1.S1_at--779--2951Chr05:14062214..14062235 (22 bp)
AATGGCTTTTGGGTATCACCAGATG
LOC_Os05g24500
OsAffx.14806.1.S1_at--155--8211Chr05:14063019..14063043 (25 bp)
GGAAGGTTCACCGATGCAATATCTA
LOC_Os05g24500
OsAffx.14806.1.S1_at--550--1211Chr05:14063064..14063088 (25 bp)
AGTTTATACAATGGCGCACACCTCC
LOC_Os05g24500
OsAffx.14806.1.S1_at--516--5651Chr05:14063102..14063126 (25 bp)
GACAGAACTCGTAGAAGCCATCTCT
LOC_Os05g24500
OsAffx.14806.1.S1_at--788--451Chr05:14063121..14063145 (25 bp)
ATCTCTTTTTCAAGGGACCATCTTC
LOC_Os05g24500
OsAffx.14806.1.S1_at--632--8671Chr05:14063154..14063178 (25 bp)
TGTGATTCAAGTGAGCTCAAGCCCC
LOC_Os05g24500
OsAffx.14806.1.S1_at--501--8971Chr05:14063194..14063218 (25 bp)
TGAAACGTGCCCTAGACTTACCATT
LOC_Os05g24500
OsAffx.14806.1.S1_at--152--891Chr05:14063279..14063303 (25 bp)
AGGCCATATTGTGGTCCTTCTGGAT
LOC_Os05g24500
OsAffx.14806.1.S1_at--651--9231Chr05:14063293..14063317 (25 bp)
TCCTTCTGGATCTCGCAAAGCTGGA
LOC_Os05g24500
OsAffx.14806.1.S1_at--850--2631Chr05:14063322..14063346 (25 bp)
AACCTCTTGCAGCATGTCCATTTGA
LOC_Os05g24500
OsAffx.14806.1.S1_at--1017--5571Chr05:14063354..14063378 (25 bp)
GAAATCCTTTTCTCAGTACGCATCT
LOC_Os05g24500
Target Sequence 
AATGGCTTTTGGGTATCACCAGATGTGTTCAAAATATTTAAAGGTGAGGATGGAAGGTTCACCGATGCAATATCTAATGA
ACCAAGGGGATTACTAAGTTTATACAATGGCGCACACCTCCTCGTCCATGATGAGACAGAACTCGTAGAAGCCATCTCTT
TTTCAAGGGACCATCTTCAATCAATATGTGATTCAAGTGAGCTCAAGCCCCCTCTAGCTGATCAAGTGAAACGTGCCCTA
GACTTACCATTACCAAGGGCATACAAGAGAATGGAAGCATTGCATTATATGTTCGAGTATGGACAGGAGGAAGGCCATAT
TGTGGTCCTTCTGGATCTCGCAAAGCTGGAGTTCAACCTCTTGCAGCATGTCCATTTGAAAGAGCTGAAATCCTTTTCTC
AGTACGCATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14806.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis