Browse Element(s) Details


OsAffx.27000.1.S1_at

Description tigr:9633.m02181
TID=OsAffx.27000.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2445011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g24370OsAffx.31869.4.S1_at9/115+14014616..14015374retrotransposon protein, putative, unclassified
LOC_Os05g24370OsAffx.31869.4.S1_x_at9/115+14014616..14015374retrotransposon protein, putative, unclassified
LOC_Os05g24370OsAffx.31869.3.S1_x_at5/115+14014616..14015374retrotransposon protein, putative, unclassified
LOC_Os05g24370OsAffx.31869.3.S1_s_at4/115+14014616..14015374retrotransposon protein, putative, unclassified
LOC_Os05g24370OsAffx.31869.5.S1_x_at3/115+14014616..14015374retrotransposon protein, putative, unclassified
LOC_Os05g24370OsAffx.31869.3.S1_at3/115+14014616..14015374retrotransposon protein, putative, unclassified
LOC_Os05g24380OsAffx.31869.4.S1_at9/115+14018968..14019738retrotransposon protein, putative, unclassified
LOC_Os05g24380OsAffx.31869.4.S1_x_at9/115+14018968..14019738retrotransposon protein, putative, unclassified
LOC_Os05g24380OsAffx.31869.3.S1_x_at5/115+14018968..14019738retrotransposon protein, putative, unclassified
LOC_Os05g24380OsAffx.31869.3.S1_s_at4/115+14018968..14019738retrotransposon protein, putative, unclassified
LOC_Os05g24380OsAffx.31869.3.S1_at3/115+14018968..14019738retrotransposon protein, putative, unclassified
LOC_Os05g24380OsAffx.31869.5.S1_x_at3/115+14018968..14019738retrotransposon protein, putative, unclassified
LOC_Os05g24390Os.46610.1.A1_x_at3/115+14020020..14020905hypothetical protein
LOC_Os05g24400NANA5+14024563..14026340hypothetical protein
LOC_Os05g24410NANA5+14026946..14027677hypothetical protein
LOC_Os05g24420OsAffx.14803.1.S1_x_at11/115+14028144..14028578Zinc knuckle family protein
LOC_Os05g24420OsAffx.15648.1.S1_at1/115+14028144..14028578Zinc knuckle family protein
LOC_Os05g24430OsAffx.4239.1.S1_at1/115+14029349..14034600retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g24440NANA5+14035849..14036890hypothetical protein
LOC_Os05g24450OsAffx.27000.1.S1_at11/115+14037768..14038751hypothetical protein
LOC_Os05g24460OsAffx.22492.1.S1_at1/115+14039990..14046146retrotransposon protein, putative, unclassified
LOC_Os05g24460OsAffx.22492.1.S1_x_at1/115+14039990..14046146retrotransposon protein, putative, unclassified
LOC_Os05g24470Os.31312.5.S1_x_at5/115+14046780..14050039retrotransposon protein, putative, unclassified
LOC_Os05g24470Os.31312.2.S1_x_at4/115+14046780..14050039retrotransposon protein, putative, unclassified
LOC_Os05g24480OsAffx.14805.1.S1_at9/115+14051946..14052833hypothetical protein
LOC_Os05g24490OsAffx.4415.1.S1_at11/115+14056263..14056935hypothetical protein
LOC_Os05g24500OsAffx.14806.1.S1_at11/115+14062055..14063408Terpene synthase, N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27000.1.S1_at--861--1791Chr05:14038323..14038347 (25 bp)
ACCGAAATCGAAGTCGCAACAGGTT
LOC_Os05g24450
OsAffx.27000.1.S1_at--845--5131Chr05:14038338..14038362 (25 bp)
GCAACAGGTTTGGAATGGGTCGAAA
LOC_Os05g24450
OsAffx.27000.1.S1_at--420--7431Chr05:14038374..14038398 (25 bp)
GTGTATGAGGATCCATCTCCTGCAA
LOC_Os05g24450
OsAffx.27000.1.S1_at--691--2431Chr05:14038397..14038421 (25 bp)
AAAAGACAACGTGGACGCACCCTCG
LOC_Os05g24450
OsAffx.27000.1.S1_at--868--8531Chr05:14038408..14038432 (25 bp)
TGGACGCACCCTCGGTCGATGACTA
LOC_Os05g24450
OsAffx.27000.1.S1_at--172--8731Chr05:14038433..14038457 (25 bp)
TGTCATCGACAAGTCCGAAGTGCCT
LOC_Os05g24450
OsAffx.27000.1.S1_at--1030--6611Chr05:14038445..14038469 (25 bp)
GTCCGAAGTGCCTAAACTGGTCAAA
LOC_Os05g24450
OsAffx.27000.1.S1_at--242--9191Chr05:14038586..14038610 (25 bp)
TGCCGGCCCAAAATACTTTGGAACA
LOC_Os05g24450
OsAffx.27000.1.S1_at--842--2651Chr05:14038642..14038666 (25 bp)
AAGCCTTTTGGCTGGATTATGCACT
LOC_Os05g24450
OsAffx.27000.1.S1_at--1017--6511Chr05:14038656..14038680 (25 bp)
GATTATGCACTTGAAGAAGGTCCGT
LOC_Os05g24450
OsAffx.27000.1.S1_at--1161--9871Chr05:14038696..14038720 (25 bp)
TACATAAATGGTACACGGACGCCAA
LOC_Os05g24450
Target Sequence 
ACCGAAATCGAAGTCGCAACAGGTTTGGAATGGGTCGAAATAGAACCAGATGTGTATGAGGATCCATCTCCTGCAAAAGA
CAACGTGGACGCACCCTCGGTCGATGACTATGTCATCGACAAGTCCGAAGTGCCTAAACTGGTCAAAAGCCACAACTCCA
AGTCCAAGGATAATCAGAAGGTGAAGTGGATGGAAAGAGATGTTGATGAGAAGAAGACCGGTGAACTTGCCGGCCCAAAA
TACTTTGGAACAGATGATTGTCTGGCAGTGTTTGAAAATGGCAAAGCCTTTTGGCTGGATTATGCACTTGAAGAAGGTCC
GTGGGAGATGAGAAGATTACATAAATGGTACACGGACGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27000.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis