Browse Element(s) Details


OsAffx.4415.1.S1_at

Description tigr:9633.m02185
TID=OsAffx.4415.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2449011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g24430OsAffx.4239.1.S1_at1/115+14029349..14034600retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g24440NANA5+14035849..14036890hypothetical protein
LOC_Os05g24450OsAffx.27000.1.S1_at11/115+14037768..14038751hypothetical protein
LOC_Os05g24460OsAffx.22492.1.S1_at1/115+14039990..14046146retrotransposon protein, putative, unclassified
LOC_Os05g24460OsAffx.22492.1.S1_x_at1/115+14039990..14046146retrotransposon protein, putative, unclassified
LOC_Os05g24470Os.31312.5.S1_x_at5/115+14046780..14050039retrotransposon protein, putative, unclassified
LOC_Os05g24470Os.31312.2.S1_x_at4/115+14046780..14050039retrotransposon protein, putative, unclassified
LOC_Os05g24480OsAffx.14805.1.S1_at9/115+14051946..14052833hypothetical protein
LOC_Os05g24490OsAffx.4415.1.S1_at11/115+14056263..14056935hypothetical protein
LOC_Os05g24500OsAffx.14806.1.S1_at11/115+14062055..14063408Terpene synthase, N-terminal domain containing protein, expressed
LOC_Os05g24510NANA5+14068004..14068210hypothetical protein
LOC_Os05g24520OsAffx.22699.1.S1_x_at4/115+14069318..14073927retrotransposon protein, putative, unclassified
LOC_Os05g24530OsAffx.2133.1.S1_at1/115+14074586..14076298hypothetical protein
LOC_Os05g24540OsAffx.27002.1.S1_at11/115+14078275..14078733hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4415.1.S1_at--136--9291Chr05:14056821..14056845 (25 bp)
TCCGGTACTTCCGTAGCTAGATCTA
LOC_Os05g24490
OsAffx.4415.1.S1_at--1094--2051Chr05:14056815..14056839 (25 bp)
ACTTCCGTAGCTAGATCTAGTGCTA
LOC_Os05g24490
OsAffx.4415.1.S1_at--251--7712Chr04:19255275..19255347 (25 bp)
GGGTGGGCGTTCGTCATTGAAAACT
NONE
OsAffx.4415.1.S1_at--733--6711Chr05:14056732..14056752 (21 bp)
GTTCGTCATTGAAAACTCAGCACCG
LOC_Os05g24490
OsAffx.4415.1.S1_at--922--3391Chr05:14056715..14056739 (25 bp)
CAGCACCGAATTTCATCCGAAAAAA
LOC_Os05g24490
OsAffx.4415.1.S1_at--98--81114Chr12:1996047..1996109 (25 bp)
GGACCGGCAAATTCGGTCTCAGTTT
NONE
OsAffx.4415.1.S1_at--589--1211Chr05:14056666..14056690 (25 bp)
AGTTTTTTCAGTCTCAGTCTCGGTC
LOC_Os05g24490
OsAffx.4415.1.S1_at--726--9432Chr04:19255410..19255434 (25 bp)
TCGGTCTGACCGAAATCACTGGAGA
NONE
OsAffx.4415.1.S1_at--700--1951Chr05:14056630..14056654 (25 bp)
ACTGGAGAAGTTCACCGGCTCAGCG
LOC_Os05g24490
OsAffx.4415.1.S1_at--188--3951Chr05:14056615..14056639 (25 bp)
CGGCTCAGCGGCAAGCACTGGTGAA
LOC_Os05g24490
OsAffx.4415.1.S1_at--371--2731Chr05:14056603..14056627 (25 bp)
AAGCACTGGTGAAGGCCACGCCGCT
LOC_Os05g24490
Target Sequence 
TCCGGTACTTCCGTAGCTAGATCTAGTGCTAGGGGTGGGCGTTCGTCATTGAAAACTCAGCACCGAATTTCATCCGAAAA
AACTCAGGACCGGCAAATTCGGTCTCAGTTTTTTCAGTCTCAGTCTCGGTCTGACCGAAATCACTGGAGAAGTTCACCGG
CTCAGCGGCAAGCACTGGTGAAGGCCACGCCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4415.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis