Browse Element(s) Details


OsAffx.14803.1.S1_x_at

Description tigr:9633.m02178
TID=OsAffx.14803.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc knuckle, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2442011/11Zinc knuckle family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g24350OsAffx.8468.1.S1_at5/115+14004787..14006688transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g24360Os.46610.1.A1_x_at3/115+14008778..14012363transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g24360OsAffx.3347.1.S1_at1/115+14008778..14012363transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g24360OsAffx.30061.1.S1_at1/115+14008778..14012363transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g24360OsAffx.30061.2.S1_at1/115+14008778..14012363transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g24370OsAffx.31869.4.S1_at9/115+14014616..14015374retrotransposon protein, putative, unclassified
LOC_Os05g24370OsAffx.31869.4.S1_x_at9/115+14014616..14015374retrotransposon protein, putative, unclassified
LOC_Os05g24370OsAffx.31869.3.S1_x_at5/115+14014616..14015374retrotransposon protein, putative, unclassified
LOC_Os05g24370OsAffx.31869.3.S1_s_at4/115+14014616..14015374retrotransposon protein, putative, unclassified
LOC_Os05g24370OsAffx.31869.5.S1_x_at3/115+14014616..14015374retrotransposon protein, putative, unclassified
LOC_Os05g24370OsAffx.31869.3.S1_at3/115+14014616..14015374retrotransposon protein, putative, unclassified
LOC_Os05g24380OsAffx.31869.4.S1_at9/115+14018968..14019738retrotransposon protein, putative, unclassified
LOC_Os05g24380OsAffx.31869.4.S1_x_at9/115+14018968..14019738retrotransposon protein, putative, unclassified
LOC_Os05g24380OsAffx.31869.3.S1_x_at5/115+14018968..14019738retrotransposon protein, putative, unclassified
LOC_Os05g24380OsAffx.31869.3.S1_s_at4/115+14018968..14019738retrotransposon protein, putative, unclassified
LOC_Os05g24380OsAffx.31869.3.S1_at3/115+14018968..14019738retrotransposon protein, putative, unclassified
LOC_Os05g24380OsAffx.31869.5.S1_x_at3/115+14018968..14019738retrotransposon protein, putative, unclassified
LOC_Os05g24390Os.46610.1.A1_x_at3/115+14020020..14020905hypothetical protein
LOC_Os05g24400NANA5+14024563..14026340hypothetical protein
LOC_Os05g24410NANA5+14026946..14027677hypothetical protein
LOC_Os05g24420OsAffx.14803.1.S1_x_at11/115+14028144..14028578Zinc knuckle family protein
LOC_Os05g24420OsAffx.15648.1.S1_at1/115+14028144..14028578Zinc knuckle family protein
LOC_Os05g24430OsAffx.4239.1.S1_at1/115+14029349..14034600retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g24440NANA5+14035849..14036890hypothetical protein
LOC_Os05g24450OsAffx.27000.1.S1_at11/115+14037768..14038751hypothetical protein
LOC_Os05g24460OsAffx.22492.1.S1_at1/115+14039990..14046146retrotransposon protein, putative, unclassified
LOC_Os05g24460OsAffx.22492.1.S1_x_at1/115+14039990..14046146retrotransposon protein, putative, unclassified
LOC_Os05g24470Os.31312.5.S1_x_at5/115+14046780..14050039retrotransposon protein, putative, unclassified
LOC_Os05g24470Os.31312.2.S1_x_at4/115+14046780..14050039retrotransposon protein, putative, unclassified
LOC_Os05g24480OsAffx.14805.1.S1_at9/115+14051946..14052833hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14803.1.S1_x_at--972--2191Chr05:14028481..14028505 (25 bp)
ACAAACGGCCTCAAGACACTGTCAA
LOC_Os05g24420
OsAffx.14803.1.S1_x_at--655--4291Chr05:14028473..14028497 (25 bp)
CCTCAAGACACTGTCAAGGCTCTGG
LOC_Os05g24420
OsAffx.14803.1.S1_x_at--197--3751Chr05:14028472..14028496 (25 bp)
CTCAAGACACTGTCAAGGCTCTGGA
LOC_Os05g24420
OsAffx.14803.1.S1_x_at--929--9711Chr05:14028471..14028495 (25 bp)
TCAAGACACTGTCAAGGCTCTGGAC
LOC_Os05g24420
OsAffx.14803.1.S1_x_at--29--3231Chr05:14028470..14028494 (25 bp)
CAAGACACTGTCAAGGCTCTGGACT
LOC_Os05g24420
OsAffx.14803.1.S1_x_at--671--2751Chr05:14028469..14028493 (25 bp)
AAGACACTGTCAAGGCTCTGGACTC
LOC_Os05g24420
OsAffx.14803.1.S1_x_at--653--1411Chr05:14028468..14028492 (25 bp)
AGACACTGTCAAGGCTCTGGACTCA
LOC_Os05g24420
OsAffx.14803.1.S1_x_at--91--2191Chr05:14028466..14028490 (25 bp)
ACACTGTCAAGGCTCTGGACTCACA
LOC_Os05g24420
OsAffx.14803.1.S1_x_at--407--3331Chr05:14028465..14028489 (25 bp)
CACTGTCAAGGCTCTGGACTCACAC
LOC_Os05g24420
OsAffx.14803.1.S1_x_at--1068--9671Chr05:14028411..14028435 (25 bp)
TCACTCTAGGAACGACTGCCGGGAA
LOC_Os05g24420
OsAffx.14803.1.S1_x_at--927--3291Chr05:14028410..14028434 (25 bp)
CACTCTAGGAACGACTGCCGGGAAA
LOC_Os05g24420
Target Sequence 
ACAAACGGCCTCAAGACACTGTCAAGGCTCTGGACTCACACGTTACATGTGAGGTCTGCGGCAACACGGGTCACTCTAGG
AACGACTGCCGGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14803.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis