Browse Element(s) Details


Os.9802.1.S1_at

Description gb:AK068582.1
DB_XREF= gi:32978599
TID=Os.9802.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.9802 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013157O09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013157O09, full insert sequence.
FL= gb:AK068582.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2459411/11Coatomer delta subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g24540OsAffx.27002.1.S1_at11/115+14078275..14078733hypothetical protein
LOC_Os05g24550Os.8744.1.S1_a_at6/115+14083606..14087136Papain family cysteine protease containing protein, expressed
LOC_Os05g24560NANA5+14087688..14090121NC domain-containing protein, putative, expressed
LOC_Os05g24570OsAffx.14807.1.S1_at11/115+14092869..14093741hypothetical protein
LOC_Os05g24580NANA5+14095652..14100295hypothetical protein
LOC_Os05g24594Os.7223.1.S1_at11/115+14103338..14119202Coatomer delta subunit, putative, expressed
LOC_Os05g24594Os.9802.1.S1_at11/115+14103338..14119202Coatomer delta subunit, putative, expressed
LOC_Os05g24594OsAffx.1755.1.S1_at2/115+14103338..14119202Coatomer delta subunit, putative, expressed
LOC_Os05g24594OsAffx.1755.1.S1_x_at2/115+14103338..14119202Coatomer delta subunit, putative, expressed
LOC_Os05g24610OsAffx.8052.1.S1_at7/115+14120267..14127447retrotransposon protein, putative, LINE subclass
LOC_Os05g24620Os.14491.2.S1_x_at4/115+14140068..14149337transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g24620Os.47463.1.S1_x_at3/115+14140068..14149337transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9802.1.S1_at--500--851Chr05:14107142..14107535 (25 bp)
ATGGAAGTATGACTCGAGAAACTCC
LOC_Os05g24594
Os.9802.1.S1_at--396--7571Chr05:14107924..14107948 (25 bp)
GGGCTCGTTTGGTGGCCGCTAATTA
LOC_Os05g24594
Os.9802.1.S1_at--37--7552Chr05:14107935..14107959 (25 bp)
GTGGCCGCTAATTACCAAGTAGTTT
LOC_Os05g24594
Os.9802.1.S1_at--358--2891Chr05:14107968..14107992 (25 bp)
AAGGGATGTTTGTTGCCTCACTTCA
LOC_Os05g24594
Os.9802.1.S1_at--1048--3651Chr05:14107988..14108012 (25 bp)
CTTCAGTGACACATGTTTGCGGTAT
LOC_Os05g24594
Os.9802.1.S1_at--1121--9131Chr05:14108005..14108029 (25 bp)
TGCGGTATATGTTATCTTTCGGCGA
LOC_Os05g24594
Os.9802.1.S1_at--121--451Chr05:14108018..14108042 (25 bp)
ATCTTTCGGCGATGAGCTGTTGAGA
LOC_Os05g24594
Os.9802.1.S1_at--1008--1111Chr05:14108076..14108100 (25 bp)
AGTGAATGTATTTTTCGCCTGTTTC
LOC_Os05g24594
Os.9802.1.S1_at--814--251Chr05:14108103..14108127 (25 bp)
ATGTAGTAACATTTTGCCCCAAATT
LOC_Os05g24594
Os.9802.1.S1_at--296--9171Chr05:14108117..14108141 (25 bp)
TGCCCCAAATTGCTGATGATCTGTA
LOC_Os05g24594
Os.9802.1.S1_at--790--711Chr05:14108132..14108156 (25 bp)
ATGATCTGTACTGCCACCCGAGAAA
LOC_Os05g24594
Target Sequence 
ATGGAAGTATGACTCGAGAAACTCCGTGTTGGAATGGTCCATTCTTCTTATCGATCAGTCGAACCGCAGTGGCTCCATGG
AATTCGTTGTCCCCCCAGCTGATCCATCAACATTTTTCCCCATATCTATTGGATTTTCCGCATCGAGTACATTCAGTGAT
TTGAAGGTTACTGGAATCCGTCCTCTGAAGGATGGTAACCCGCCAAAGTATTCGCAGAGGGCTCGTTTGGTGGCCGCTAA
TTACCAAGTAGTTTAACCTAACAAGGGATGTTTGTTGCCTCACTTCAGTGACACATGTTTGCGGTATATGTTATCTTTCG
GCGATGAGCTGTTGAGAAGTCATGACAAACAAGGATTGTTTTGTATTTACAGTGAATGTATTTTTCGCCTGTTTCANATG
TAGTAACATTTTGCCCCAAATTGCTGATGATCTGTACTGCCACCCGAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9802.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis