Browse Element(s) Details


Os.7255.1.S1_at

Description gb:AK063514.1
DB_XREF= gi:32973532
TID=Os.7255.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7255 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013169N13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-116-G06, full insert sequence.
FL= gb:AK063514.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1357011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13530Os.11831.1.S1_at1/116+7467751..7468414Benzoate carboxyl methyltransferase, putative, expressed
LOC_Os06g13540OsAffx.10048.1.S1_x_at1/116+7468965..7473317retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g13550NANA6+7473909..7474599Jasmonate O-methyltransferase, putative
LOC_Os06g13560Os.11831.1.S1_at11/116+7479074..7481195SAM dependent carboxyl methyltransferase family protein, expressed
LOC_Os06g13570Os.7255.1.S1_at11/116+7487067..7495669expressed protein
LOC_Os06g13570Os.7255.2.S1_at11/116+7487067..7495669expressed protein
LOC_Os06g13570Os.52782.1.S1_at1/116+7487067..7495669expressed protein
LOC_Os06g13580OsAffx.27615.2.S1_at11/116+7497332..7499518expressed protein
LOC_Os06g13590OsAffx.27616.1.S1_at11/116+7518620..7519481hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7255.1.S1_at--787--3451Chr06:7489755..7489968 (25 bp)
CAGTCCTACTTGTGGTGCAAGCAAG
LOC_Os06g13570
Os.7255.1.S1_at--336--7351Chr06:7489958..7489982 (25 bp)
GTGCAAGCAAGGCTGGCTCCATGAT
LOC_Os06g13570
Os.7255.1.S1_at--298--8331Chr06:7489972..7489996 (25 bp)
GGCTCCATGATTTCGTTTCCTAATT
LOC_Os06g13570
Os.7255.1.S1_at--571--111Chr06:7489997..7490021 (25 bp)
ATTCTCATATGAGGCTATGCCAGGT
LOC_Os06g13570
Os.7255.1.S1_at--1136--10111Chr06:7490012..7490036 (25 bp)
TATGCCAGGTAGCTTTGGGACCCAC
LOC_Os06g13570
Os.7255.1.S1_at--794--5811Chr06:7490030..7490054 (25 bp)
GACCCACAGCTGTAAGACTGGACTT
LOC_Os06g13570
Os.7255.1.S1_at--1160--8111Chr06:7490049..7490073 (25 bp)
GGACTTTCGAGTCGTGGGCACCACA
LOC_Os06g13570
Os.7255.1.S1_at--72--2711Chr06:7490077..7490101 (25 bp)
AAGCTAATTCAGCAAGTTTCACAAT
LOC_Os06g13570
Os.7255.1.S1_at--985--5151Chr06:7490159..7490183 (25 bp)
GAATTAGTTCAAGCCTTTTCGTATT
LOC_Os06g13570
Os.7255.1.S1_at--1095--2631Chr06:7490169..7490193 (25 bp)
AAGCCTTTTCGTATTTGAGTATGAG
LOC_Os06g13570
Os.7255.1.S1_at--663--6171Chr06:7490232..7490256 (25 bp)
GAGGAACTCGTAAGTTTTCAGTAGA
LOC_Os06g13570
Target Sequence 
CAGTCCTACTTGTGGTGCAAGCAAGGCTGGCTCCATGATTTCGTTTCCTAATTATTCTCATATGAGGCTATGCCAGGTAG
CTTTGGGACCCACAGCTGTAAGACTGGACTTTCGAGTCGTGGGCACCACAGCCAAGCTAATTCAGCAAGTTTCACAATTC
TTTAATAAAGTTTTTCAGTTTGTAATTAAGTTGATTAGCAATTTTCTTGGTAAAAGAATTAGTTCAAGCCTTTTCGTATT
TGAGTATGAGGTTTTTATTCTTTCAAGATAATGTTTTGGATGCAAATAGAGGAACTCGTAAGTTTTCAGTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7255.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis