Browse Element(s) Details


OsAffx.27615.2.S1_at

Description tigr:9634.m01349
TID=OsAffx.27615.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1358011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13540OsAffx.10048.1.S1_x_at1/116+7468965..7473317retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g13550NANA6+7473909..7474599Jasmonate O-methyltransferase, putative
LOC_Os06g13560Os.11831.1.S1_at11/116+7479074..7481195SAM dependent carboxyl methyltransferase family protein, expressed
LOC_Os06g13570Os.7255.1.S1_at11/116+7487067..7495669expressed protein
LOC_Os06g13570Os.7255.2.S1_at11/116+7487067..7495669expressed protein
LOC_Os06g13570Os.52782.1.S1_at1/116+7487067..7495669expressed protein
LOC_Os06g13580OsAffx.27615.2.S1_at11/116+7497332..7499518expressed protein
LOC_Os06g13590OsAffx.27616.1.S1_at11/116+7518620..7519481hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27615.2.S1_at--356--8251Chr06:7498196..7498220 (25 bp)
GGCAGTTTCAACAAACAGTTTCTGT
LOC_Os06g13580
OsAffx.27615.2.S1_at--762--2411Chr06:7497933..7497957 (25 bp)
AAAAAGATCTGCTCCATCATGATGA
LOC_Os06g13580
OsAffx.27615.2.S1_at--1106--3551Chr06:7497688..7497943 (25 bp)
CATCATGATGAGGTTCGTCGGGAGT
LOC_Os06g13580
OsAffx.27615.2.S1_at--165--10631Chr06:7497675..7497699 (25 bp)
TTCGTCGGGAGTTGGCTGATACCCA
LOC_Os06g13580
OsAffx.27615.2.S1_at--308--6491Chr06:7497658..7497682 (25 bp)
GATACCCAGGCGAAGAGAGCTCTTA
LOC_Os06g13580
OsAffx.27615.2.S1_at--190--211Chr06:7497587..7497611 (25 bp)
ATATCCTTTTCTTGGGTTCGTTCAG
LOC_Os06g13580
OsAffx.27615.2.S1_at--523--1191Chr06:7497561..7497585 (25 bp)
AGTTTTCGAACTCACTACATCTTGT
LOC_Os06g13580
OsAffx.27615.2.S1_at--47--9891Chr06:7497546..7497570 (25 bp)
TACATCTTGTGCTATTCCCTGTGCA
LOC_Os06g13580
OsAffx.27615.2.S1_at--784--10651Chr06:7497532..7497556 (25 bp)
TTCCCTGTGCAAATTCACCAAGCGT
LOC_Os06g13580
OsAffx.27615.2.S1_at--1036--3231Chr06:7497514..7497538 (25 bp)
CAAGCGTTTTGCAAAAGGCGTTTCT
LOC_Os06g13580
OsAffx.27615.2.S1_at--615--10511Chr06:7497493..7497517 (25 bp)
TTCTTTAACGGGAAGCAAGCGGGCA
LOC_Os06g13580
Target Sequence 
GGCAGTTTCAACAAACAGTTTCTGTAGAGTTTAAACGACAGAAGTGCTCTGAGCTGCCCTCAGGAGAAGGTCAACATGTC
AGAGACATGAGCAAAATCGAGGAGTCAGAAGGTATTTTGAAAGATTTGATTGATAAGGTGAACAATGCTGATGCCGAGTT
GCATGTCTTAGAAGAAGAGTATAAAAAAGATCTGCTCCATCATGATGAGGTTCGTCGGGAGTTGGCTGATACCCAGGCGA
AGAGAGCTCTTATGGAGGCTGTGATGGGAGAGACGAAGCAGCTGCAGGAGCTTGGAGAATATCCTTTTCTTGGGTTCGTT
CAGAAGTTTTCGAACTCACTACATCTTGTGCTATTCCCTGTGCAAATTCACCAAGCGTTTTGCAAAAGGCGTTTCTTTAA
CGGGAAGCAAGCGGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27615.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis