Browse Element(s) Details


Os.7349.1.S1_at

Description gb:AK105012.2
DB_XREF= gi:42821627
TID=Os.7349.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7349 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-205-F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-008-B02, full insert sequence.
FL= gb:AK109354.2 gb:AK105012.2 gb:AK101248.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0318011/11Protein of unknown function, DUF614 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03130Os.25731.1.S1_at11/113+1296606..1299984Ubiquitin-conjugating enzyme E2 I, putative, expressed
LOC_Os03g03140Os.9314.1.S1_at11/113+1300894..1302829RNA recognition motif family protein, expressed
LOC_Os03g03150Os.6063.1.S1_at11/113+1305742..1309535Fizzy-related protein homolog, putative, expressed
LOC_Os03g03164Os.4164.2.S1_a_at11/113+1318397..1323586Homeobox protein HD1, putative, expressed
LOC_Os03g03180Os.7349.1.S1_at11/113+1324348..1327861Protein of unknown function, DUF614 containing protein, expressed
LOC_Os03g03190OsAffx.3121.1.S1_at11/113+1328923..1329342hypothetical protein
LOC_Os03g03200Os.17325.1.S1_at11/113+1333861..1336527expressed protein
LOC_Os03g03210NANA3+1342173..1346917retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g03220Os.46995.1.S1_x_at1/113+1347247..1350160retrotransposon protein, putative, unclassified
LOC_Os03g03230NANA3+1350524..1352245retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7349.1.S1_at--173--2291Chr03:1324884..1324908 (25 bp)
AAATGTCGCGCATCGATCAGCCTAT
LOC_Os03g03180
Os.7349.1.S1_at--965--6611Chr03:1324849..1324873 (25 bp)
GTTGGGTACACACCACAACAGCCAG
LOC_Os03g03180
Os.7349.1.S1_at--848--2471Chr03:1324833..1324857 (25 bp)
AACAGCCAGCATACGGTCAGCCTTA
LOC_Os03g03180
Os.7349.1.S1_at--308--9731Chr03:1324781..1324805 (25 bp)
TCAAGGTTATCCACCAGCTGCTTAC
LOC_Os03g03180
Os.7349.1.S1_at--1155--10472Chr12:12209037..12209056 (20 bp)
TTAATCGATCTGTGACTGGTCTGGG
NONE
Os.7349.1.S1_at--784--5731Chr03:1324521..1324545 (25 bp)
GACTGGTCTGGGTGGTAAACTGCAA
LOC_Os03g03180
Os.7349.1.S1_at--1032--6571Chr03:1324486..1324510 (25 bp)
GATTCCTCCGGGTGTGGTATACTGT
LOC_Os03g03180
Os.7349.1.S1_at--967--7851Chr03:1324471..1324495 (25 bp)
GGTATACTGTGAACCCGTTTCGTAG
LOC_Os03g03180
Os.7349.1.S1_at--231--9391Chr03:1324452..1324476 (25 bp)
TCGTAGAAATTATCAGCTCCCCGTG
LOC_Os03g03180
Os.7349.1.S1_at--969--3791Chr03:1324436..1324460 (25 bp)
CTCCCCGTGTTGATCATTCTTGAAT
LOC_Os03g03180
Os.7349.1.S1_at--313--7971Chr03:1324392..1324416 (25 bp)
GGATCGCCATGAAATGTCAACTTAG
LOC_Os03g03180
Target Sequence 
AAATGTCGCGCATCGATCAGCCTATTCCACCTCCTGTTGGGTACACACCACAACAGCCAGCATACGGTCAGCCTTATGGT
GGCTATCCTCCTGCTCCGCCTGCTCAAGGTTATCCACCAGCTGCTTACCCTCCGGCAGGTTACCCCCAGGGTGGTGCATA
CCCTCCNCCTGGCTCTTATCCCCCACCTGGTTCCTACCCGCCTCAGGGCTCCTACCCTCCTCCACAAGGTTACTACGGCA
AGTAAAGGAAATGCAGAAATTGGAGATATGTCTTTGTGACGAAATCGGTATATTGTGAACAATGTAAACATTAGGGTGGT
TGTAGTGTTATTATAGGTGATGTCGATATATTAATCGATCTGTGACTGGTCTGGGTGGTAAACTGCAAACATAATTTGGA
TTCCTCCGGGTGTGGTATACTGTGAACCCGTTTCGTAGAAATTATCAGCTCCCCGTGTTGATCATTCTTGAATACGTTCT
TCTCTGAATAAAGGATCGCCATGAAATGTCAACTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7349.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis