Browse Element(s) Details


Os.7545.1.S1_a_at

Description gb:AK109424.2
DB_XREF= gi:42821738
TID=Os.7545.1
CNT=17
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.7545 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0666G04.16 (P0666G04.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-306-A09, full insert sequence.
FL= gb:AK069381.1 gb:AK109424.2 gb:AK106185.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0866011/11Major intrinsic protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08620NANA1+4287816..4288127hypothetical protein
LOC_Os01g08630OsAffx.21914.1.S1_at11/111+4294733..4299183expressed protein
LOC_Os01g08630OsAffx.21914.2.S1_at9/111+4294733..4299183expressed protein
LOC_Os01g08640NANA1+4301587..4301969transposon protein, putative, unclassified
LOC_Os01g08650Os.37600.1.S1_at10/111+4303684..4306737expressed protein
LOC_Os01g08660Os.7545.1.S1_a_at11/111+4310471..4312614Major intrinsic protein, expressed
LOC_Os01g08670Os.51447.1.S1_s_at11/111+4314803..4315582expressed protein
LOC_Os01g08680Os.34739.1.S1_a_at11/111+4319529..4323144expressed protein
LOC_Os01g08680Os.34739.2.S1_at1/111+4319529..4323144expressed protein
LOC_Os01g08690OsAffx.10970.1.S1_at9/111+4323380..4325632holocarboxylase synthetase, putative, expressed
LOC_Os01g08700Os.7987.1.S1_at11/111+4326162..4335288GIGANTEA protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006833biological_processwater transport
GO:0009269biological_processresponse to desiccation
GO:0005783cellular_componentendoplasmic reticulum
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0015250molecular_functionwater channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7545.1.S1_a_at--213--8471Chr01:4311955..4311979 (25 bp)
TGGCCGTGCTCTGGATCATCGTCAA
LOC_Os01g08660
Os.7545.1.S1_a_at--465--7071Chr01:4311922..4311946 (25 bp)
GTAATCCCATCGTCAAGACCTGGAT
LOC_Os01g08660
Os.7545.1.S1_a_at--1023--551Chr01:4311848..4311867 (20 bp)
ATCCATGAACCCTGCCAATGCGTTT
LOC_Os01g08660
Os.7545.1.S1_a_at--164--7372Chr01:4310886..4310910 (25 bp)
GTGAACAATCGCCACAACACATGGG
LOC_Os01g08660
Os.7545.1.S1_a_at--210--2452Chr01:4310871..4310895 (25 bp)
AACACATGGGAGCAATTCTACGTCT
LOC_Os01g08660
Os.7545.1.S1_a_at--762--112Chr01:4310857..4310881 (25 bp)
ATTCTACGTCTACTGGATATGCCCT
LOC_Os01g08660
Os.7545.1.S1_a_at--990--251Chr01:4310841..4310865 (25 bp)
ATATGCCCTTTTGTTGGCGCTGTTC
LOC_Os01g08660
Os.7545.1.S1_a_at--726--8211Chr01:4310660..4310684 (25 bp)
GGAATAATCCTTTCCACCATATTTA
LOC_Os01g08660
Os.7545.1.S1_a_at--134--4911Chr01:4310612..4310636 (25 bp)
GCTTCGGAACACTGACAAACCCAAG
LOC_Os01g08660
Os.7545.1.S1_a_at--260--3071Chr01:4310545..4310569 (25 bp)
AATCATTCATTGGTCTTGTTTGCTC
LOC_Os01g08660
Os.7545.1.S1_a_at--267--9591Chr01:4310532..4310556 (25 bp)
TCTTGTTTGCTCTTGAACTGGTGGA
LOC_Os01g08660
Target Sequence 
TGGCCGTGCTCTGGATCATCGTCAAGGGGCCCCGTAATCCCATCGTCAAGACCTGGATGCTCTCCATCTCCACCGTTTGC
CTCGTCCTCACCGGCGCTGCCTACACTGGCCCATCCATGAACCCTGCCAATGCGTTTGGCTGGGCATATGTGAACAATCG
CCACAACACATGGGAGCAATTCTACGTCTACTGGATATGCCCTTTTGTTGGCGCTGTTCTTGCTGCCTGGGTCTTCAGGG
CCGTGTTCCCACCACCGGCACCTAAACCTAAGGCCAAGAAAGCATGAGGAAATCAAGCACAAACTTCAACTCAGGAGTTG
GTACAGATGTTGGGTTTGAAGAACCCAACATTATTTATTAGCTAGAATGGTACAAGGAATAATCCTTTCCACCATATTTA
ATTCAAAGTAATTTAGGTAATTAGCTTCGGAACACTGACAAACCCAAGAGCATGCACATTAATTTGATTGGACGACCTGA
ATGTAATTTCAATCATTCATTGGTCTTGTTTGCTCTTGAACTGGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7545.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis