Browse Element(s) Details


Os.37600.1.S1_at

Description gb:AK066557.1
DB_XREF= gi:32976575
TID=Os.37600.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37600 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0666G04.15 (P0666G04.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013071B19, full insert sequence.
FL= gb:AK066557.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0865010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08600OsAffx.10967.4.S1_at8/111+4278556..4280424expressed protein
LOC_Os01g08600OsAffx.7664.1.S1_x_at1/111+4278556..4280424expressed protein
LOC_Os01g08600OsAffx.10967.1.S1_x_at1/111+4278556..4280424expressed protein
LOC_Os01g08610OsAffx.24445.1.S1_at11/111+4281428..4284885transposase, putative
LOC_Os01g08620NANA1+4287816..4288127hypothetical protein
LOC_Os01g08630OsAffx.21914.1.S1_at11/111+4294733..4299183expressed protein
LOC_Os01g08630OsAffx.21914.2.S1_at9/111+4294733..4299183expressed protein
LOC_Os01g08640NANA1+4301587..4301969transposon protein, putative, unclassified
LOC_Os01g08650Os.37600.1.S1_at10/111+4303684..4306737expressed protein
LOC_Os01g08660Os.7545.1.S1_a_at11/111+4310471..4312614Major intrinsic protein, expressed
LOC_Os01g08670Os.51447.1.S1_s_at11/111+4314803..4315582expressed protein
LOC_Os01g08680Os.34739.1.S1_a_at11/111+4319529..4323144expressed protein
LOC_Os01g08680Os.34739.2.S1_at1/111+4319529..4323144expressed protein
LOC_Os01g08690OsAffx.10970.1.S1_at9/111+4323380..4325632holocarboxylase synthetase, putative, expressed
LOC_Os01g08700Os.7987.1.S1_at11/111+4326162..4335288GIGANTEA protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37600.1.S1_at--887--8691Chr01:4304829..4304853 (25 bp)
TGTCCTCAGCCTGACCCAAGATGGG
LOC_Os01g08650
Os.37600.1.S1_at--336--5271Chr01:4304871..4304895 (25 bp)
GAATGTCATCGAGCAGGTACCTGCA
LOC_Os01g08650
Os.37600.1.S1_at--810--3471Chr01:4304884..4304908 (25 bp)
CAGGTACCTGCACAAGTTGATGAAT
LOC_Os01g08650
Os.37600.1.S1_at--833--6631Chr01:4304920..4304944 (25 bp)
GTTGTCGATGATGACCTGGTGCCCA
LOC_Os01g08650
Os.37600.1.S1_at--619--4271Chr01:4304934..4304958 (25 bp)
CCTGGTGCCCATTGCCAATTATATG
LOC_Os01g08650
Os.37600.1.S1_at--516--9971NONE
TACCTACAGGACCACCAGAGAGCTG
NONE
Os.37600.1.S1_at--484--2671Chr01:4306454..4306478 (25 bp)
AAGCGCAAGCAGATGGAGTACTACT
LOC_Os01g08650
Os.37600.1.S1_at--1142--4891Chr01:4306537..4306561 (25 bp)
GCTTACATCCTGTGACTGTGAGATG
LOC_Os01g08650
Os.37600.1.S1_at--223--3431Chr01:4306590..4306614 (25 bp)
CAGAGCTTATTTTGTCACTACCAGA
LOC_Os01g08650
Os.37600.1.S1_at--297--5491Chr01:4306626..4306650 (25 bp)
TGACTAAGCCTAGCAGTTAAACTGA
LOC_Os01g08650
Os.37600.1.S1_at--960--2011Chr01:4306695..4306719 (25 bp)
ACTACTAATAGTGTTGGGCTCTTCA
LOC_Os01g08650
Target Sequence 
TGTCCTCAGCCTGACCCAAGATGGGGTAATGTATACCATTCTGAATGTCATCGAGCAGGTACCTGCACAAGTTGATGAAT
TTGGGATCGTCGTTGTCGATGATGACCTGGTGCCCATTGCCAATTATATGATCCGCTTCGACATTCGGCGNAAANCAAGG
TCCTGNTCCTNCCACAANGATATCTCAANNCATGGTGAANTTGCNAGTGGCTTATACCCNAATCTCNATTGCCNACTGAC
TTCACTGCATACCTACAGGACCACCAGAGAGCTGAAGAAGCAGGCAAGGTAGGAGCAAGCGCCAAGGGGAAGCGCAAGCA
GATGGAGTACTACTGAATGATATGTAGTATATTTCTGCTATTTATCATGCACATAACATATCGCTTTTTTTNGCTTACAT
CCTGTGACTGTGAGATGTAAGGTCAAATGTGTTTAGGTTAACCATCAGAGCTTATTTTGTCACTACCAGACCTTATTTTA
ATGACTAAGCCTAGCAGTTAAACTGAATGGTAACCAGTATGTATGTGTAATCATCGTGGATTTATGTCATACTACTAATA
GTGTTGGGCTCTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37600.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis