Browse Element(s) Details


OsAffx.24445.1.S1_at

Description tigr:9629.m00800
TID=OsAffx.24445.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hAT family dimerisation domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0861011/11transposase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08570OsAffx.23162.2.S1_at11/111+4261049..4266936oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os01g08570OsAffx.23162.1.S1_x_at11/111+4261049..4266936oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os01g08570OsAffx.23162.1.S1_at6/111+4261049..4266936oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os01g08580Os.45973.1.A1_at1/111+4269633..4273135expressed protein
LOC_Os01g08590OsAffx.9715.1.S1_at4/111+4275673..4275915hypothetical protein
LOC_Os01g08600OsAffx.10967.4.S1_at8/111+4278556..4280424expressed protein
LOC_Os01g08600OsAffx.7664.1.S1_x_at1/111+4278556..4280424expressed protein
LOC_Os01g08600OsAffx.10967.1.S1_x_at1/111+4278556..4280424expressed protein
LOC_Os01g08610OsAffx.24445.1.S1_at11/111+4281428..4284885transposase, putative
LOC_Os01g08620NANA1+4287816..4288127hypothetical protein
LOC_Os01g08630OsAffx.21914.1.S1_at11/111+4294733..4299183expressed protein
LOC_Os01g08630OsAffx.21914.2.S1_at9/111+4294733..4299183expressed protein
LOC_Os01g08640NANA1+4301587..4301969transposon protein, putative, unclassified
LOC_Os01g08650Os.37600.1.S1_at10/111+4303684..4306737expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24445.1.S1_at--1018--1211Chr01:4284398..4284422 (25 bp)
AGTTACTCATATGTGCAGCTGCCTT
LOC_Os01g08610
OsAffx.24445.1.S1_at--790--771Chr01:4284408..4284432 (25 bp)
ATGTGCAGCTGCCTTAAGTCCTAGG
LOC_Os01g08610
OsAffx.24445.1.S1_at--2--9791Chr01:4284422..4284446 (25 bp)
TAAGTCCTAGGCAATCATTTCATGA
LOC_Os01g08610
OsAffx.24445.1.S1_at--146--7971Chr01:4284516..4284540 (25 bp)
GGATCTTAGACATCATCTTTCTCTT
LOC_Os01g08610
OsAffx.24445.1.S1_at--744--9551Chr01:4284531..4284555 (25 bp)
TCTTTCTCTTTATATCGCTGATGTG
LOC_Os01g08610
OsAffx.24445.1.S1_at--961--2391Chr01:4284584..4284608 (25 bp)
AAACTATATGTCAGCTTTCCCAAAA
LOC_Os01g08610
OsAffx.24445.1.S1_at--182--9072Chr01:4284634..4284658 (25 bp)
TGCTATCCATTGGTTTACCGGCTTT
LOC_Os01g08610
OsAffx.24445.1.S1_at--177--2711Chr01:4284661..4284685 (25 bp)
AAGCTAGCATTGGTTTTGCCTGTTG
LOC_Os01g08610
OsAffx.24445.1.S1_at--844--4471Chr01:4284678..4284702 (25 bp)
GCCTGTTGCCACTGCTACAGTTGAA
LOC_Os01g08610
OsAffx.24445.1.S1_at--111--8691Chr01:4284726..4284750 (25 bp)
TGTGAAGACGTATTTGCGCAATCGC
LOC_Os01g08610
OsAffx.24445.1.S1_at--837--7071Chr01:4284829..4284853 (25 bp)
GTAATTCACCGATTTGAGACCTTAA
LOC_Os01g08610
Target Sequence 
AGTTACTCATATGTGCAGCTGCCTTAAGTCCTAGGCAATCATTTCATGATTTCAATTTAGAGCATTTGATGAGTTTAGCA
AAACTTTATCCAAAGGATTTTGATGATGGGGAACTAATGGATCTTAGACATCATCTTTCTCTTTATATCGCTGATGTGCG
TGGAGATGATAGATTCGCTAACATTGAAACTATATGTCAGCTTTCCCAAAAAATGGTGGACACAAGAAAACATATTTGCT
ATCCATTGGTTTACCGGCTTTTAAAGCTAGCATTGGTTTTGCCTGTTGCCACTGCTACAGTTGAAAGATGTTTTTCAGCC
ATGAAAATTGTGAAGACGTATTTGCGCAATCGCATTAGTGATGAACACTTGAGTGATTGTGTTATTTGCTATGTTGAGAA
ACAAGAATTGATGAAAGTTACCAACAGTGCAGTAATTCACCGATTTGAGACCTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24445.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis