Browse Element(s) Details


Os.45973.1.A1_at

Description gb:NM_189558.1
DB_XREF= gi:34906199
GEN=OJ1174_D05.18
TID=Os.45973.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45973 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1174_D05.18 (OJ1174_D05.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) OJ1174_D05.18 (OJ1174_D05.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g085801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08550Os.23665.1.A1_at11/111+4242248..4246549expressed protein
LOC_Os01g08560Os.5504.1.S2_at11/111+4250647..4256427dnaK protein, expressed
LOC_Os01g08560Os.5504.1.S1_at11/111+4250647..4256427dnaK protein, expressed
LOC_Os01g08560Os.50414.1.S1_at1/111+4250647..4256427dnaK protein, expressed
LOC_Os01g08570OsAffx.23162.2.S1_at11/111+4261049..4266936oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os01g08570OsAffx.23162.1.S1_x_at11/111+4261049..4266936oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os01g08570OsAffx.23162.1.S1_at6/111+4261049..4266936oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os01g08580Os.45973.1.A1_at1/111+4269633..4273135expressed protein
LOC_Os01g08590OsAffx.9715.1.S1_at4/111+4275673..4275915hypothetical protein
LOC_Os01g08600OsAffx.10967.4.S1_at8/111+4278556..4280424expressed protein
LOC_Os01g08600OsAffx.7664.1.S1_x_at1/111+4278556..4280424expressed protein
LOC_Os01g08600OsAffx.10967.1.S1_x_at1/111+4278556..4280424expressed protein
LOC_Os01g08610OsAffx.24445.1.S1_at11/111+4281428..4284885transposase, putative
LOC_Os01g08620NANA1+4287816..4288127hypothetical protein
LOC_Os01g08630OsAffx.21914.1.S1_at11/111+4294733..4299183expressed protein
LOC_Os01g08630OsAffx.21914.2.S1_at9/111+4294733..4299183expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45973.1.A1_at--790--3191Chr01:4269942..4270141 (25 bp)
CAAGTCCATCATCAGTACTCAAGGG
LOC_Os01g08580
Os.45973.1.A1_at--755--9671NONE
TCACTGTTTTCCTGGCTAGTGCTGA
NONE
Os.45973.1.A1_at--669--8771NONE
TGTTTTCCTGGCTAGTGCTGACATG
NONE
Os.45973.1.A1_at--307--3711Chr01:4264689..4264713 (25 bp)
CTAGTGCTGACATGGCATTTTGAGA
NONE
Os.45973.1.A1_at--822--10751Chr01:4264670..4264694 (25 bp)
TTGAGAAGGTGTGCTCGCCTCTTGC
NONE
Os.45973.1.A1_at--78--9331Chr01:4264656..4264680 (25 bp)
TCGCCTCTTGCGCTATCAACATTGC
NONE
Os.45973.1.A1_at--952--9151Chr01:4264648..4264672 (25 bp)
TGCGCTATCAACATTGCCCCATGCA
NONE
Os.45973.1.A1_at--1044--71Chr01:4264636..4264660 (25 bp)
ATTGCCCCATGCACGGAGGCAGGAT
NONE
Os.45973.1.A1_at--286--651Chr01:4264628..4264652 (25 bp)
ATGCACGGAGGCAGGATTCCGAGCA
NONE
Os.45973.1.A1_at--430--931Chr01:4264620..4264644 (25 bp)
AGGCAGGATTCCGAGCACGCATCAG
NONE
Os.45973.1.A1_at--896--5011Chr01:4264618..4264642 (25 bp)
GCAGGATTCCGAGCACGCATCAGCT
NONE
Target Sequence 
CAAGTCCATCATCAGTACTCAAGGGGCTCGAACTCGAACTACGGGTCATCTTTTCGGAACCCGGCCTCCCACTCTTTCCC
CTACACCGATCGTGCCGGTTTTGTCGGACCGGCACCAGGTGCTCGGCCGCACTTCGCACCGGGAAGCTCCATGGGCACGC
GCCGTGCTGGGGTGCTGTACGGTGGACCTGGAGCGACATTTGGAGCCGGCCATGGCTATGGTGCTGGTGCTGGGCATCAA
TCTTACCATCACTAAAGATGGTTTAGACTTTGGACTGGATGTTGATGTTACTGAATGCTCACTGTTTTCCTGGCTAGTGC
TGACATGGCATTTTGAGAAGGTGTGCTCGCCTCTTGCGCTATCAACATTGCCCCATGCACGGAGGCAGGATTCCGAGCAC
GCATCAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45973.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis