Browse Element(s) Details


OsAffx.23162.1.S1_at

Description gb:NM_189557.1
DB_XREF= gi:34906197
GEN=OJ1174_D05.17
TID=OsAffx.23162.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1174_D05.17 (OJ1174_D05.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g085706/11oxidoreductase, 2OG-Fe oxygenase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08540Os.46027.1.S1_x_at11/111+4231375..4241333MutS domain III family protein, expressed
LOC_Os01g08540Os.50609.1.S1_at10/111+4231375..4241333MutS domain III family protein, expressed
LOC_Os01g08550Os.23665.1.A1_at11/111+4242248..4246549expressed protein
LOC_Os01g08560Os.5504.1.S2_at11/111+4250647..4256427dnaK protein, expressed
LOC_Os01g08560Os.5504.1.S1_at11/111+4250647..4256427dnaK protein, expressed
LOC_Os01g08560Os.50414.1.S1_at1/111+4250647..4256427dnaK protein, expressed
LOC_Os01g08570OsAffx.23162.2.S1_at11/111+4261049..4266936oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os01g08570OsAffx.23162.1.S1_x_at11/111+4261049..4266936oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os01g08570OsAffx.23162.1.S1_at6/111+4261049..4266936oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os01g08580Os.45973.1.A1_at1/111+4269633..4273135expressed protein
LOC_Os01g08590OsAffx.9715.1.S1_at4/111+4275673..4275915hypothetical protein
LOC_Os01g08600OsAffx.10967.4.S1_at8/111+4278556..4280424expressed protein
LOC_Os01g08600OsAffx.7664.1.S1_x_at1/111+4278556..4280424expressed protein
LOC_Os01g08600OsAffx.10967.1.S1_x_at1/111+4278556..4280424expressed protein
LOC_Os01g08610OsAffx.24445.1.S1_at11/111+4281428..4284885transposase, putative
LOC_Os01g08620NANA1+4287816..4288127hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23162.1.S1_at--325--10831Chr01:4261780..4262149 (25 bp)
TTGTCCGCATACCAGCCATTACATC
LOC_Os01g08570
OsAffx.23162.1.S1_at--268--3871NONE
CTGATGGTGCTAGAGCTATCGGAAA
NONE
OsAffx.23162.1.S1_at--558--6251NONE
GATGGTGCTAGAGCTATCGGAAACT
NONE
OsAffx.23162.1.S1_at--856--8591NONE
TGGTGCTAGAGCTATCGGAAACTGT
NONE
OsAffx.23162.1.S1_at--277--7171NONE
GTGCTAGAGCTATCGGAAACTGTGC
NONE
OsAffx.23162.1.S1_at--90--9091NONE
TGCTAGAGCTATCGGAAACTGTGCC
NONE
OsAffx.23162.1.S1_at--883--10031Chr01:4263362..4263383 (22 bp)
TAGAGCTATCGGAAACTGTGCCGCA
LOC_Os01g08570
OsAffx.23162.1.S1_at--616--5911Chr01:4263362..4263385 (24 bp)
GAGCTATCGGAAACTGTGCCGCACA
LOC_Os01g08570
OsAffx.23162.1.S1_at--1075--1551Chr01:4263362..4263386 (25 bp)
AGCTATCGGAAACTGTGCCGCACAC
LOC_Os01g08570
OsAffx.23162.1.S1_at--768--4871Chr01:4263363..4263387 (25 bp)
GCTATCGGAAACTGTGCCGCACACA
LOC_Os01g08570
OsAffx.23162.1.S1_at--479--10131Chr01:4263365..4263389 (25 bp)
TATCGGAAACTGTGCCGCACACACG
LOC_Os01g08570
Target Sequence 
TTGTCCGCATACCAGCCATTACATCCGGAGCTGTACACAAATGATCCATCAACTTTCATCCTACCGGCATTTCTTCAAGC
CATAAATGGCAACACCGAAGAAAGCATCACAAGCATAATGATGGAGCCAGCACCGGGAGTGTTTGCATTTCCTATGCTGA
AGCCCTCATTCTGCCAGATGTTAATGTCAGAGGTGAACAATTTTTTGAGGTGGGCACAATCAGCGAATCAAAGGATAATG
AGACCAACATCCTTAGATAGGCATGGGAGAGGTGCTGCCCTCTCTGATTTTGGCTTGCAAGAGATGTTAGACAATCTGAT
GAAGGATTTCATCTCACCAATGTCTACAGTTCTTTTCCCTGAAGTTGGCGGCAATACACTGGACTCCCACCATACATTCG
TTCTTGAGTATGGTGAGGCTGATGGTGCTAGAGCTATCGGAAACTGTGCCGCACACACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23162.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis