Browse Element(s) Details


Os.23665.1.A1_at

Description gb:CA760235
DB_XREF= gi:25804274
DB_XREF=BR060011A20A03.ab1
CLONE=BR060011A20A03.ab1
TID=Os.23665.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.23665 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1174_D05.15 (OJ1174_D05.15), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0855011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08530NANA1+4228902..4230362transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g08540Os.46027.1.S1_x_at11/111+4231375..4241333MutS domain III family protein, expressed
LOC_Os01g08540Os.50609.1.S1_at10/111+4231375..4241333MutS domain III family protein, expressed
LOC_Os01g08550Os.23665.1.A1_at11/111+4242248..4246549expressed protein
LOC_Os01g08560Os.5504.1.S2_at11/111+4250647..4256427dnaK protein, expressed
LOC_Os01g08560Os.5504.1.S1_at11/111+4250647..4256427dnaK protein, expressed
LOC_Os01g08560Os.50414.1.S1_at1/111+4250647..4256427dnaK protein, expressed
LOC_Os01g08570OsAffx.23162.2.S1_at11/111+4261049..4266936oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os01g08570OsAffx.23162.1.S1_x_at11/111+4261049..4266936oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os01g08570OsAffx.23162.1.S1_at6/111+4261049..4266936oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os01g08580Os.45973.1.A1_at1/111+4269633..4273135expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004812molecular_functionaminoacyl-tRNA ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23665.1.A1_at--17--8831Chr01:4242792..4242816 (25 bp)
TGATGCTTATGATCCCAACAAGGGT
LOC_Os01g08550
Os.23665.1.A1_at--694--7191Chr01:4242712..4242736 (25 bp)
GTCGGTTTGACAAGCCTCCGCAAGG
LOC_Os01g08550
Os.23665.1.A1_at--168--8271Chr01:4242595..4242619 (25 bp)
GGCAGAGGCCAACATCTATCTCAAA
LOC_Os01g08550
Os.23665.1.A1_at--628--5031Chr01:4242570..4242594 (25 bp)
GCAGTTTTCTCTATCAGGCTCGGAA
LOC_Os01g08550
Os.23665.1.A1_at--597--7251Chr01:4242507..4242531 (25 bp)
GTCCGGCTCACCTTAGATAAACTTA
LOC_Os01g08550
Os.23665.1.A1_at--522--5211Chr01:4242447..4242471 (25 bp)
GAATTCAGTAGTTCAGTCCTCTCAC
LOC_Os01g08550
Os.23665.1.A1_at--266--9531Chr01:4242428..4242452 (25 bp)
TCTCACCAGCTTCCAATTGTATCAG
LOC_Os01g08550
Os.23665.1.A1_at--1081--7011Chr01:4242347..4242371 (25 bp)
GTACATATGCGTCAACTGCGCGCGT
LOC_Os01g08550
Os.23665.1.A1_at--487--4131Chr01:4242327..4242351 (25 bp)
CGCGTCACCACTTAGGTCTAGTTTA
LOC_Os01g08550
Os.23665.1.A1_at--977--2051Chr01:4242297..4242321 (25 bp)
ACTTCTGTTTATCACGATGTCGCTG
LOC_Os01g08550
Os.23665.1.A1_at--80--9351Chr01:4242278..4242302 (25 bp)
TCGCTGCTTGCTGTGAAATATTTTG
LOC_Os01g08550
Target Sequence 
TGATGCTTATGATCCCAACAAGGGTGATNCTGAAGAGGAGGAAGTATTTGTCCCACGTAAGAGGACTCGTCTTGCCTCCC
GTCGGTTTGACAAGCCTCCGCAAGGGCTCCGCCGGAGTCGGAGAAATATGAAAAACGACGAANACGTCATGCGCCCAGGA
CAGCTTACTCCTCGATCCATGACAAAGANAACAATGAGGCAGAGGCCAACATCTATCTCAAAGCAGTTTTCTCTATCAGG
CTCGGAAGATGATCGTGAAATGATAGTTGCAGACTCTGAGGAGGAGTCCGGCTCACCTTAGATAAACTTATGCCCCCTTT
TGCATTTTGTTTGTTGGAAGCTTGTGAATTCAGTAGTTCAGTCCTCTCACCAGCTTCCAATTGTATCAGGTAGGGGAAAG
CAGGCAGCACCAGCCACTACTTACCACCCAGTTGCTGTGGTGATTGTACATATGCGTCAACTGCGCGCGTCACCACTTAG
GTCTAGTTTATGAGAACTTCTGTTTATCACGATGTCGCTGCTTGCTGTGAAATATTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23665.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis