Browse Element(s) Details


Os.46027.1.S1_x_at

Description gb:NM_189554.1
DB_XREF= gi:34906191
GEN=OJ1174_D05.14
TID=Os.46027.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46027 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative DNA mismatch repair gene (OJ1174_D05.14), mRNA.
PROD=putative DNA mismatch repair gene
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0854011/11MutS domain III family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08510Os.36975.3.S1_x_at11/111+4205373..4210104MAR binding filament-like protein 1, putative, expressed
LOC_Os01g08520Os.23583.1.S1_at11/111+4211840..4214349expressed protein
LOC_Os01g08520Os.23583.2.S1_x_at11/111+4211840..4214349expressed protein
LOC_Os01g08530NANA1+4228902..4230362transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g08540Os.46027.1.S1_x_at11/111+4231375..4241333MutS domain III family protein, expressed
LOC_Os01g08540Os.50609.1.S1_at10/111+4231375..4241333MutS domain III family protein, expressed
LOC_Os01g08550Os.23665.1.A1_at11/111+4242248..4246549expressed protein
LOC_Os01g08560Os.5504.1.S2_at11/111+4250647..4256427dnaK protein, expressed
LOC_Os01g08560Os.5504.1.S1_at11/111+4250647..4256427dnaK protein, expressed
LOC_Os01g08560Os.50414.1.S1_at1/111+4250647..4256427dnaK protein, expressed
LOC_Os01g08570OsAffx.23162.2.S1_at11/111+4261049..4266936oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os01g08570OsAffx.23162.1.S1_x_at11/111+4261049..4266936oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os01g08570OsAffx.23162.1.S1_at6/111+4261049..4266936oxidoreductase, 2OG-Fe oxygenase family protein

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Gene Ontology Classification
GO idTypeName
GO:0006298biological_processmismatch repair
GO:0003684molecular_functiondamaged DNA binding
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46027.1.S1_x_at--1106--6971Chr01:4232617..4232641 (25 bp)
GTACCTTTCTTGTCGAATGCACTGA
LOC_Os01g08540
Os.46027.1.S1_x_at--466--5111Chr01:4232599..4232623 (25 bp)
GCACTGAGACTGCATCTATTCTTGA
LOC_Os01g08540
Os.46027.1.S1_x_at--184--1011Chr01:4232563..4232587 (25 bp)
AGGATTCTCTCGTCTTGCTTGATGA
LOC_Os01g08540
Os.46027.1.S1_x_at--288--3611Chr01:4232537..4232561 (25 bp)
CTTGGCAGAGGAACTAGCACATTTG
LOC_Os01g08540
Os.46027.1.S1_x_at--883--9051Chr01:4232027..4232523 (25 bp)
TGCATATGCAGTATTCCGACACCTT
LOC_Os01g08540
Os.46027.1.S1_x_at--1044--5631Chr01:4232010..4232034 (25 bp)
GACACCTTGTCGAAGCGGTCCGATG
LOC_Os01g08540
Os.46027.1.S1_x_at--1023--8451Chr01:4231908..4231932 (25 bp)
TGGCCTGCATGCTGAAGCCAAGAAA
LOC_Os01g08540
Os.46027.1.S1_x_at--694--2791Chr01:4231729..4231753 (25 bp)
AAGATCGCCGGGAACTTCAGGTCGA
LOC_Os01g08540
Os.46027.1.S1_x_at--676--971Chr01:4231701..4231725 (25 bp)
AGGAGCGTGCGGAGTTCTCGACCCT
LOC_Os01g08540
Os.46027.1.S1_x_at--809--1211Chr01:4231689..4231713 (25 bp)
AGTTCTCGACCCTCCATGAGGAGTG
LOC_Os01g08540
Os.46027.1.S1_x_at--848--951Chr01:4231614..4231638 (25 bp)
AGGACACCATGGACACGCTGTTCTG
LOC_Os01g08540
Target Sequence 
GTACCTTTCTTGTCGAATGCACTGAGACTGCATCTATTCTTGAGAATGCAACCGAGGATTCTCTCGTCTTGCTTGATGAG
CTTGGCAGAGGAACTAGCACATTTGATGGATATGCAATTGCATATGCAGTATTCCGACACCTTGTCGAAGCGGTCCGATG
CCGTCTGCTCTTCGCAACTCACTACCATCCTCTCACCAAGGAGTTCGCCTCTCACCCCCACGTCACCCTTCAGCACATGG
CCTGCATGCTGAAGCCAAGAAACGGCGGCGACGGCGGCGAGAAGGAGCTCACCTTCCTCTACCGGCTCACCTCGGGCGCC
TGCCCGGAGAGCTACGGCCTGCAGGTCGCCACCATGGCAGGGCTCCCGAGGTCGATCGTGGAGAGGGCGTCGGCCGCCGG
CGAGATGATGAGGTCGAAGATCGCCGGGAACTTCAGGTCGAGCGAGGAGCGTGCGGAGTTCTCGACCCTCCATGAGGAGT
GGGTGAGGACGATCGTGGCGATCGGCGGCGTGAAGGACGCGCACCTGGACGAGGACACCATGGACACGCTGTTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46027.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis