Browse Element(s) Details


Os.5504.1.S2_at

Description gb:AK100676.1
DB_XREF= gi:32985885
TID=Os.5504.1
CNT=32
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5504 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative heat-shock protein (OJ1174_D05.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023113C17, full insert sequence.
FL= gb:AK059244.1 gb:AK100676.1 gb:AK061691.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0856011/11dnaK protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08530NANA1+4228902..4230362transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g08540Os.46027.1.S1_x_at11/111+4231375..4241333MutS domain III family protein, expressed
LOC_Os01g08540Os.50609.1.S1_at10/111+4231375..4241333MutS domain III family protein, expressed
LOC_Os01g08550Os.23665.1.A1_at11/111+4242248..4246549expressed protein
LOC_Os01g08560Os.5504.1.S2_at11/111+4250647..4256427dnaK protein, expressed
LOC_Os01g08560Os.5504.1.S1_at11/111+4250647..4256427dnaK protein, expressed
LOC_Os01g08560Os.50414.1.S1_at1/111+4250647..4256427dnaK protein, expressed
LOC_Os01g08570OsAffx.23162.2.S1_at11/111+4261049..4266936oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os01g08570OsAffx.23162.1.S1_x_at11/111+4261049..4266936oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os01g08570OsAffx.23162.1.S1_at6/111+4261049..4266936oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os01g08580Os.45973.1.A1_at1/111+4269633..4273135expressed protein
LOC_Os01g08590OsAffx.9715.1.S1_at4/111+4275673..4275915hypothetical protein
LOC_Os01g08600OsAffx.10967.4.S1_at8/111+4278556..4280424expressed protein
LOC_Os01g08600OsAffx.7664.1.S1_x_at1/111+4278556..4280424expressed protein
LOC_Os01g08600OsAffx.10967.1.S1_x_at1/111+4278556..4280424expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009408biological_processresponse to heat
GO:0005634cellular_componentnucleus
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5504.1.S2_at--110--7611Chr01:4255978..4256002 (25 bp)
GGGAACTGAAGCTGCCTAGGCTGCA
LOC_Os01g08560
Os.5504.1.S2_at--1090--4751Chr01:4255997..4256021 (25 bp)
GCTGCAGCTGCGGAAACGTTTTTCA
LOC_Os01g08560
Os.5504.1.S2_at--209--10331Chr01:4256017..4256041 (25 bp)
TTTCAGTTTCCTGCAAGTTGCTGCT
LOC_Os01g08560
Os.5504.1.S2_at--151--4811Chr01:4256042..4256066 (25 bp)
GCTCGGTCTGCATTCGTTATCAGAT
LOC_Os01g08560
Os.5504.1.S2_at--598--9391Chr01:4256061..4256085 (25 bp)
TCAGATTCCGACACCGAAGTTCAGT
LOC_Os01g08560
Os.5504.1.S2_at--608--9891Chr01:4256120..4256144 (25 bp)
TACTTCGTGAGGATCATCTGCGTGA
LOC_Os01g08560
Os.5504.1.S2_at--217--10151Chr01:4256162..4256186 (25 bp)
TATCCTACTGTACCAATGTGTTGTT
LOC_Os01g08560
Os.5504.1.S2_at--1131--8651Chr01:4256178..4256202 (25 bp)
TGTGTTGTTAAAATCGGCTTTCCCT
LOC_Os01g08560
Os.5504.1.S2_at--69--5111Chr01:4256250..4256274 (25 bp)
GCACGTTTCAGATTTGGTGTCCTAC
LOC_Os01g08560
Os.5504.1.S2_at--412--3511Chr01:4256348..4256372 (25 bp)
CATGGGATTTGCACGCTCTTCTGGA
LOC_Os01g08560
Os.5504.1.S2_at--776--4811Chr01:4256362..4256386 (25 bp)
GCTCTTCTGGACTTACTTTTGCATG
LOC_Os01g08560
Target Sequence 
GGGAACTGAAGCTGCCTAGGCTGCAGCTGCGGAAACGTTTTTCAGTTTCCTGCAAGTTGCTGCTGCTCGGTCTGCATTCG
TTATCAGATTCCGACACCGAAGTTCAGTAGAGGTTCGCTAGGGATGGATTTGTGATTCACCATACTTCGTGAGGATCATC
TGCGTGAACGTACGTTTAGGTTTATATCCTACTGTACCAATGTGTTGTTAAAATCGGCTTTCCCTTTTTAATTTTTCTGC
CAAGGGGTTTTCTTTCAATTCGAGATATAAGGGCACGTTTCAGATTTGGTGTCCTACGGGGTGGGTGTTATAGCGGGACT
TACAATGGAACTCAAATTTTTAAGTCCGATGTATCANCTGATTCTTGTTCCATGGGATTTGCACGCTCTTCTGGACTTAC
TTTTGCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5504.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis