Browse Element(s) Details


OsAffx.9715.1.S1_at

Description gb:NM_189559.1
DB_XREF= gi:34906201
GEN=OJ1174_D05.19
TID=OsAffx.9715.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1174_D05.19 (OJ1174_D05.19), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g085904/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08560Os.5504.1.S2_at11/111+4250647..4256427dnaK protein, expressed
LOC_Os01g08560Os.5504.1.S1_at11/111+4250647..4256427dnaK protein, expressed
LOC_Os01g08560Os.50414.1.S1_at1/111+4250647..4256427dnaK protein, expressed
LOC_Os01g08570OsAffx.23162.2.S1_at11/111+4261049..4266936oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os01g08570OsAffx.23162.1.S1_x_at11/111+4261049..4266936oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os01g08570OsAffx.23162.1.S1_at6/111+4261049..4266936oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os01g08580Os.45973.1.A1_at1/111+4269633..4273135expressed protein
LOC_Os01g08590OsAffx.9715.1.S1_at4/111+4275673..4275915hypothetical protein
LOC_Os01g08600OsAffx.10967.4.S1_at8/111+4278556..4280424expressed protein
LOC_Os01g08600OsAffx.7664.1.S1_x_at1/111+4278556..4280424expressed protein
LOC_Os01g08600OsAffx.10967.1.S1_x_at1/111+4278556..4280424expressed protein
LOC_Os01g08610OsAffx.24445.1.S1_at11/111+4281428..4284885transposase, putative
LOC_Os01g08620NANA1+4287816..4288127hypothetical protein
LOC_Os01g08630OsAffx.21914.1.S1_at11/111+4294733..4299183expressed protein
LOC_Os01g08630OsAffx.21914.2.S1_at9/111+4294733..4299183expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9715.1.S1_at--707--1451Chr01:4275626..4275650 (25 bp)
AGAAGATTTCAACCCTAGTAGCAGT
NONE
OsAffx.9715.1.S1_at--161--4311Chr01:4275599..4275623 (25 bp)
CCTAGTAGCAGTTGGGCTTGGGCAA
NONE
OsAffx.9715.1.S1_at--30--2751Chr01:4275662..4275686 (25 bp)
AAGAAGAAGACATGGCCCTCGCCCT
NONE
OsAffx.9715.1.S1_at--650--9491Chr01:4275756..4275780 (25 bp)
TCTCCACGAACCAGTAGTGATCCGC
LOC_Os01g08590
OsAffx.9715.1.S1_at--374--10071Chr01:4275770..4275794 (25 bp)
TAGTGATCCGCCGTGGTGACCAGGA
LOC_Os01g08590
OsAffx.9715.1.S1_at--713--8231Chr01:4275827..4275851 (25 bp)
GGCACGCCAACGAGTTGACGCACGG
LOC_Os01g08590
OsAffx.9715.1.S1_at--308--8391Chr01:4275879..4275903 (25 bp)
GGCGAACTCCCACGTGCCGTGGAAC
LOC_Os01g08590
OsAffx.9715.1.S1_at--936--9051NONE
TGCCGTGGAACGAGCCGCGAAAAAT
NONE
OsAffx.9715.1.S1_at--882--8071Chr01:4276781..4276805 (25 bp)
GGACCTGTTGTACCCGATTTTGCGA
NONE
OsAffx.9715.1.S1_at--845--6951Chr01:4276790..4276814 (25 bp)
GTACCCGATTTTGCGAGCAAGGGAT
NONE
OsAffx.9715.1.S1_at--756--3173Chr01:4276859..4276883 (25 bp)
CAAAGTGAACTTATTTCGGAGGTCT
NONE
Target Sequence 
AGAAGATTTCAACCCTAGTAGCAGTTGGGCTTGGGCAAGAAGAAGACATGGCCCTCGCCCTCGGTCTCGTGGAACTCCAG
CTCGCCGTCCCACTCGCACTTCTTGATCCCCTCCGCGTACGAGCGTGCCCTCTCCACGAACCAGTAGTGATCCGCCGTGG
TGACCAGGACGCGGCTGGCCCTGAGCTGCCTCCACTCCTCCGGCACGCCAACGAGTTGACGCACGGGCGGTCGAGGCCGA
GCTTGCCGGCGCTGGCGAACTCCCACGTGCCGTGGAACGAGCCGCGAAAAATTTGTTTTCGTATTCGTGTCCGATCATAT
TCGATTCTTATTCGTATTCGAGATAGTCCGTATTTGTTTCCGTATTCGAGCTATCCGTATTTGTTTCCGTATCCGGCAAA
AAATATGAAAACGAATATGTTGGGGGACCTGTTGTACCCGATTTTGCGAGCAAGGGATGAAAATCGGACTGGGCAACAAA
TAGAGGAACCCAAAGAGGGACCCAAAGTGAACTTATTTCGGAGGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9715.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis