Browse Element(s) Details


Os.23583.1.S1_at

Description gb:AK108226.1
DB_XREF= gi:32993435
TID=Os.23583.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23583 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1174_D05.12 (OJ1174_D05.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-140-F04, full insert sequence.
FL= gb:AK108226.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0852011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08480NANA1+4184295..4188517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g08490OsAffx.20858.5.S1_x_at11/111+4193739..4195635hypothetical protein
LOC_Os01g08490OsAffx.20858.1.S1_x_at5/111+4193739..4195635hypothetical protein
LOC_Os01g08490OsAffx.20858.4.S1_x_at3/111+4193739..4195635hypothetical protein
LOC_Os01g08500Os.11575.2.S1_a_at11/111+4196215..4198118transposon protein, putative, Pong sub-class
LOC_Os01g08500Os.11575.4.S1_x_at11/111+4196215..4198118transposon protein, putative, Pong sub-class
LOC_Os01g08500Os.11575.3.S1_x_at8/111+4196215..4198118transposon protein, putative, Pong sub-class
LOC_Os01g08510Os.36975.3.S1_x_at11/111+4205373..4210104MAR binding filament-like protein 1, putative, expressed
LOC_Os01g08520Os.23583.1.S1_at11/111+4211840..4214349expressed protein
LOC_Os01g08520Os.23583.2.S1_x_at11/111+4211840..4214349expressed protein
LOC_Os01g08530NANA1+4228902..4230362transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g08540Os.46027.1.S1_x_at11/111+4231375..4241333MutS domain III family protein, expressed
LOC_Os01g08540Os.50609.1.S1_at10/111+4231375..4241333MutS domain III family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23583.1.S1_at--503--731Chr01:4212308..4212332 (25 bp)
ATGTTCGTCGCGACATGACCTGACC
LOC_Os01g08520
Os.23583.1.S1_at--131--8811Chr01:4212307..4212331 (25 bp)
TGTTCGTCGCGACATGACCTGACCC
LOC_Os01g08520
Os.23583.1.S1_at--143--10631Chr01:4212305..4212329 (25 bp)
TTCGTCGCGACATGACCTGACCCTT
LOC_Os01g08520
Os.23583.1.S1_at--599--5611Chr01:4212288..4212312 (25 bp)
TGACCCTTCCCGTGGCCTGGACCGA
LOC_Os01g08520
Os.23583.1.S1_at--1014--8251Chr01:4211890..4211914 (25 bp)
GGCAGCAGTGACAATGTCTGCAATA
LOC_Os01g08520
Os.23583.1.S1_at--435--3411Chr01:4211888..4211912 (25 bp)
CAGCAGTGACAATGTCTGCAATATT
LOC_Os01g08520
Os.23583.1.S1_at--675--2231Chr01:4211880..4211904 (25 bp)
ACAATGTCTGCAATATTGCTACACT
LOC_Os01g08520
Os.23583.1.S1_at--13--771Chr01:4211877..4211901 (25 bp)
ATGTCTGCAATATTGCTACACTACT
LOC_Os01g08520
Os.23583.1.S1_at--38--7171Chr01:4211875..4211899 (25 bp)
GTCTGCAATATTGCTACACTACTTC
LOC_Os01g08520
Os.23583.1.S1_at--34--3851Chr01:4211873..4211897 (25 bp)
CTGCAATATTGCTACACTACTTCTG
LOC_Os01g08520
Os.23583.1.S1_at--1033--5191Chr01:4211871..4211895 (25 bp)
GCAATATTGCTACACTACTTCTGCT
LOC_Os01g08520
Target Sequence 
ATGTTCGTCGCGACATGACCTGACCCTTCCCGTGGCCTGGACCGACCGATTGAACCTGTCCTCGCCTCCGCAAGTTGTCC
AAATTTTTTTCCCCCTGGTCTTCTACCAGGGGATAGATCAAGATGATCGAATCACCAGCTCACATTGCTATCTATCATCA
GTCTGTTGTTTTTGATTCAGCAAACTGAAGAAGAAGAAGAAGCCAATGTTCTTGGTGGGTCATTATCACTGGAGACGATG
AGCTTTTTTCTTTTACTGGACCTGGAAACTTGCAGAGATCTGGGCTTTTTAGAGAAAAGAGAGGTCGCCTGCCTGCCTTT
AGTGATTTTAGTCGTGTAGTTTTGATCCTAAGGCTGCTGGCCAGTGCCCACATCCATTTTTTTTCTTCCTTTTCTTTCTT
CTTCATTTCTTGCTCTTTGGCAGCAGTGACAATGTCTGCAATATTGCTACACTACTTCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23583.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis