Browse Element(s) Details


Os.23583.2.S1_x_at

Description gb:CA760071
DB_XREF= gi:25804110
DB_XREF=BR060002A10H12.ab1
CLONE=BR060002A10H12.ab1
TID=Os.23583.2
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.23583 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1174_D05.12 (OJ1174_D05.12), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0852011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08480NANA1+4184295..4188517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g08490OsAffx.20858.5.S1_x_at11/111+4193739..4195635hypothetical protein
LOC_Os01g08490OsAffx.20858.1.S1_x_at5/111+4193739..4195635hypothetical protein
LOC_Os01g08490OsAffx.20858.4.S1_x_at3/111+4193739..4195635hypothetical protein
LOC_Os01g08500Os.11575.2.S1_a_at11/111+4196215..4198118transposon protein, putative, Pong sub-class
LOC_Os01g08500Os.11575.4.S1_x_at11/111+4196215..4198118transposon protein, putative, Pong sub-class
LOC_Os01g08500Os.11575.3.S1_x_at8/111+4196215..4198118transposon protein, putative, Pong sub-class
LOC_Os01g08510Os.36975.3.S1_x_at11/111+4205373..4210104MAR binding filament-like protein 1, putative, expressed
LOC_Os01g08520Os.23583.1.S1_at11/111+4211840..4214349expressed protein
LOC_Os01g08520Os.23583.2.S1_x_at11/111+4211840..4214349expressed protein
LOC_Os01g08530NANA1+4228902..4230362transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g08540Os.46027.1.S1_x_at11/111+4231375..4241333MutS domain III family protein, expressed
LOC_Os01g08540Os.50609.1.S1_at10/111+4231375..4241333MutS domain III family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23583.2.S1_x_at--1005--8511Chr01:4212271..4212295 (25 bp)
TGGACCGACCGATTGAACCTGTCCT
LOC_Os01g08520
Os.23583.2.S1_x_at--853--6291Chr01:4212187..4212211 (25 bp)
GATGATCGAATCACCAGCTCACATT
LOC_Os01g08520
Os.23583.2.S1_x_at--614--4831Chr01:4212171..4212195 (25 bp)
GCTCACATTGCTATCTATCATCAGT
LOC_Os01g08520
Os.23583.2.S1_x_at--100--3571Chr01:4212153..4212177 (25 bp)
CATCAGTCTGTTGTTTTTGATTCAG
LOC_Os01g08520
Os.23583.2.S1_x_at--337--2651Chr01:4212109..4212133 (25 bp)
AAGCCAATGTTCTTGGTGGGTCATT
LOC_Os01g08520
Os.23583.2.S1_x_at--1148--7731Chr01:4212095..4212119 (25 bp)
GGTGGGTCATTATCACTGGAGACGA
LOC_Os01g08520
Os.23583.2.S1_x_at--401--3651Chr01:4212059..4212083 (25 bp)
CTTTTACTGGACCTGGAAACTTGCA
LOC_Os01g08520
Os.23583.2.S1_x_at--452--1431Chr01:4212016..4212040 (25 bp)
AGAAAAGAGAGGTCGCCTGCCTGCC
LOC_Os01g08520
Os.23583.2.S1_x_at--514--4411Chr01:4211998..4212022 (25 bp)
GCCTGCCTTTAGTGATTTTAGTCGT
LOC_Os01g08520
Os.23583.2.S1_x_at--1098--7431Chr01:4211975..4211999 (25 bp)
GTGTAGTTTTGATCCTAAGGCTGCT
LOC_Os01g08520
Os.23583.2.S1_x_at--610--10551Chr01:4211907..4211931 (25 bp)
TTCATTTCTTGCTCTTTGGCAGCAG
LOC_Os01g08520
Target Sequence 
TGGACCGACCGATTGAACCTGTCCTCCCCTCCGNAAGTTGTCCAAATTTTTTCCCCNCTGGTCTTNTACCAGGGGATAGA
TCAAGATGATCGAATCACCAGCTCACATTGCTATCTATCATCAGTCTGTTGTTTTTGATTCAGCAAACTGAAGAAGAAGA
AGAAGCCAATGTTCTTGGTGGGTCATTATCACTGGAGACGATGAGCTTTTTTNCTTTTACTGGACCTGGAAACTTGCAGA
GATCTGGGCTTTTTAGAGAAAAGAGAGGTCGCCTGCCTGCCTTTAGTGATTTTAGTCGTGTAGTTTTGATCCTAAGGCTG
CTGGNCAGTGNCCACATCCATTTTTTTTCTTCCTTTTCTTTCTTCTTCATTTCTTGCTCTTTGGCAGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23583.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis